miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19542 5' -60.8 NC_004685.1 + 6041 0.66 0.551222
Target:  5'- gUGuuGUGGCAUCGAGacgaGUCUCGu -3'
miRNA:   3'- gGCggCGCCGUAGCUCcug-CGGAGCu -5'
19542 5' -60.8 NC_004685.1 + 441 0.66 0.551222
Target:  5'- -aGCCGCGGUcggUGAGGucgGCGCCaaagaugCGAu -3'
miRNA:   3'- ggCGGCGCCGua-GCUCC---UGCGGa------GCU- -5'
19542 5' -60.8 NC_004685.1 + 29985 0.66 0.551222
Target:  5'- gCCGCCGCGGUc-----GACGCCgguggCGAc -3'
miRNA:   3'- -GGCGGCGCCGuagcucCUGCGGa----GCU- -5'
19542 5' -60.8 NC_004685.1 + 42446 0.66 0.54219
Target:  5'- aCCGCCcacgacagcccuugGCGGCGUCGGuGG-UGCCgaacuucgccagccgUCGAg -3'
miRNA:   3'- -GGCGG--------------CGCCGUAGCU-CCuGCGG---------------AGCU- -5'
19542 5' -60.8 NC_004685.1 + 39215 0.66 0.537193
Target:  5'- gCCGCCugGCGGCGgcuucggcgccggcUgGGGGacgggcuugcccaGCGCCUCGu -3'
miRNA:   3'- -GGCGG--CGCCGU--------------AgCUCC-------------UGCGGAGCu -5'
19542 5' -60.8 NC_004685.1 + 48917 0.66 0.535199
Target:  5'- aUCGCCgagauaGCGGCGUCGAcGGccuggcccuuggagcGgGUCUCGAa -3'
miRNA:   3'- -GGCGG------CGCCGUAGCU-CC---------------UgCGGAGCU- -5'
19542 5' -60.8 NC_004685.1 + 21303 0.66 0.531218
Target:  5'- gCUGUgGUGGCGcggCGAGGcgauGCGCUUCGu -3'
miRNA:   3'- -GGCGgCGCCGUa--GCUCC----UGCGGAGCu -5'
19542 5' -60.8 NC_004685.1 + 43471 0.66 0.531218
Target:  5'- gCGCCugaagucCGGCGUCGGGGGCGgUaUGAg -3'
miRNA:   3'- gGCGGc------GCCGUAGCUCCUGCgGaGCU- -5'
19542 5' -60.8 NC_004685.1 + 67361 0.66 0.531218
Target:  5'- gCGCCGCGucaacuggucgcGCAUCcgcuGGA-GCCUCGGc -3'
miRNA:   3'- gGCGGCGC------------CGUAGcu--CCUgCGGAGCU- -5'
19542 5' -60.8 NC_004685.1 + 1275 0.66 0.531218
Target:  5'- gCGCgCGUGGCGcaUCGgacccGGGGCGCacaCUCGGa -3'
miRNA:   3'- gGCG-GCGCCGU--AGC-----UCCUGCG---GAGCU- -5'
19542 5' -60.8 NC_004685.1 + 60470 0.66 0.530225
Target:  5'- gCGCUGgccuccuUGGCGUCGGGGuCGCCcccaucaucgUCGGg -3'
miRNA:   3'- gGCGGC-------GCCGUAGCUCCuGCGG----------AGCU- -5'
19542 5' -60.8 NC_004685.1 + 13539 0.66 0.521315
Target:  5'- aCCGaCCGCGGUcUUGAGGGucCGCaaccCGAa -3'
miRNA:   3'- -GGC-GGCGCCGuAGCUCCU--GCGga--GCU- -5'
19542 5' -60.8 NC_004685.1 + 57876 0.66 0.520328
Target:  5'- aCGCCGCcuGGCGUUGAacucuucgaccauGcGccGCGCCUCGGc -3'
miRNA:   3'- gGCGGCG--CCGUAGCU-------------C-C--UGCGGAGCU- -5'
19542 5' -60.8 NC_004685.1 + 38499 0.66 0.511484
Target:  5'- gCGCCG-GGCAccgCGcGGAuCGCCUuCGAc -3'
miRNA:   3'- gGCGGCgCCGUa--GCuCCU-GCGGA-GCU- -5'
19542 5' -60.8 NC_004685.1 + 16681 0.66 0.511484
Target:  5'- gCUGCCGgucaUGGCGUCGGuGGugGagUCGAu -3'
miRNA:   3'- -GGCGGC----GCCGUAGCU-CCugCggAGCU- -5'
19542 5' -60.8 NC_004685.1 + 3182 0.66 0.511484
Target:  5'- gCCGCCaaGGCGcggGAGGcGCGCCcCGAc -3'
miRNA:   3'- -GGCGGcgCCGUag-CUCC-UGCGGaGCU- -5'
19542 5' -60.8 NC_004685.1 + 43941 0.66 0.505622
Target:  5'- aCGCCaaccaguacaccauCGGCAUCGAGuGCGCCUgGc -3'
miRNA:   3'- gGCGGc-------------GCCGUAGCUCcUGCGGAgCu -5'
19542 5' -60.8 NC_004685.1 + 36889 0.66 0.501731
Target:  5'- uCgGCCGCGGCcgCGGGcACGUCgggcaGAa -3'
miRNA:   3'- -GgCGGCGCCGuaGCUCcUGCGGag---CU- -5'
19542 5' -60.8 NC_004685.1 + 69152 0.67 0.49206
Target:  5'- cCCGCgCGCuGCuggCGGGcGACGaCCUCGu -3'
miRNA:   3'- -GGCG-GCGcCGua-GCUC-CUGC-GGAGCu -5'
19542 5' -60.8 NC_004685.1 + 64191 0.67 0.49206
Target:  5'- gUGCCGCGGUGUCGAGua-GUCgCGGa -3'
miRNA:   3'- gGCGGCGCCGUAGCUCcugCGGaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.