miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19561 3' -62.5 NC_004686.1 + 47329 0.66 0.338499
Target:  5'- uUCCGCA-GCCGaaccGCGCCaCCGUCGAg -3'
miRNA:   3'- -AGGCGUuCGGUgc--CGUGGcGGCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 3823 0.66 0.338499
Target:  5'- gUCGUAccAGUC-CGcCGCCGCCGCCAu -3'
miRNA:   3'- aGGCGU--UCGGuGCcGUGGCGGCGGUu -5'
19561 3' -62.5 NC_004686.1 + 43727 0.66 0.330657
Target:  5'- -aCGUuGGUCGCGGCacgcaaccuggGCCGCCGCg-- -3'
miRNA:   3'- agGCGuUCGGUGCCG-----------UGGCGGCGguu -5'
19561 3' -62.5 NC_004686.1 + 42872 0.66 0.32833
Target:  5'- gUCCGCcuGCCugGcuuccaacuccugaGCcCgCGCCGCCAAc -3'
miRNA:   3'- -AGGCGuuCGGugC--------------CGuG-GCGGCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 56151 0.66 0.322949
Target:  5'- gUCGCGGGuCCACcggucgcgGGUGCCGaaCCGCCAGg -3'
miRNA:   3'- aGGCGUUC-GGUG--------CCGUGGC--GGCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 22736 0.66 0.322949
Target:  5'- cCCGCcuaacCCcCGGCGCCGCgGCUAu -3'
miRNA:   3'- aGGCGuuc--GGuGCCGUGGCGgCGGUu -5'
19561 3' -62.5 NC_004686.1 + 9773 0.66 0.322949
Target:  5'- uUCUGCu-GCCAa--CACUGCCGCCAc -3'
miRNA:   3'- -AGGCGuuCGGUgccGUGGCGGCGGUu -5'
19561 3' -62.5 NC_004686.1 + 12422 0.66 0.322949
Target:  5'- gUCGUcguGGCCGcCGGCAuaGCCGCCc- -3'
miRNA:   3'- aGGCGu--UCGGU-GCCGUggCGGCGGuu -5'
19561 3' -62.5 NC_004686.1 + 28881 0.66 0.322186
Target:  5'- aUCCaGCAGGaacaccaacaacaCCGCGGCGacacCCGCCGCa-- -3'
miRNA:   3'- -AGG-CGUUC-------------GGUGCCGU----GGCGGCGguu -5'
19561 3' -62.5 NC_004686.1 + 51737 0.66 0.319904
Target:  5'- uUCCGCu-GCgGCGGCACCGaccucuucagggaCGUCGg -3'
miRNA:   3'- -AGGCGuuCGgUGCCGUGGCg------------GCGGUu -5'
19561 3' -62.5 NC_004686.1 + 10133 0.66 0.314626
Target:  5'- aCCGCGcgcuggaAGuCCGCGGCAgaaaccUUGCCGUCAGa -3'
miRNA:   3'- aGGCGU-------UC-GGUGCCGU------GGCGGCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 12332 0.66 0.307938
Target:  5'- gCCGCAAGggGCGGCuauGCCGgCgGCCAc -3'
miRNA:   3'- aGGCGUUCggUGCCG---UGGC-GgCGGUu -5'
19561 3' -62.5 NC_004686.1 + 22471 0.66 0.307938
Target:  5'- -aUGCGguuguAGCCAuCGGUGCCgguGCCGCCAu -3'
miRNA:   3'- agGCGU-----UCGGU-GCCGUGG---CGGCGGUu -5'
19561 3' -62.5 NC_004686.1 + 39450 0.67 0.300635
Target:  5'- --gGCAGGCCACGaucucggcGCAuuuCCGCgGCCAGg -3'
miRNA:   3'- aggCGUUCGGUGC--------CGU---GGCGgCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 49962 0.67 0.293466
Target:  5'- aUCGUuucGCCGCGGCcuUCGUCGCCGg -3'
miRNA:   3'- aGGCGuu-CGGUGCCGu-GGCGGCGGUu -5'
19561 3' -62.5 NC_004686.1 + 14584 0.67 0.293466
Target:  5'- gCCGC--GCCACGGCuCCGgaUCGCCu- -3'
miRNA:   3'- aGGCGuuCGGUGCCGuGGC--GGCGGuu -5'
19561 3' -62.5 NC_004686.1 + 54845 0.67 0.293466
Target:  5'- uUCCGUGA-CCGCGGUaaggacccgcGCCGgcCCGCCAAc -3'
miRNA:   3'- -AGGCGUUcGGUGCCG----------UGGC--GGCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 5620 0.67 0.286431
Target:  5'- cUCCGgGccGCCACGGacgguguccgaCACCGCCGCg-- -3'
miRNA:   3'- -AGGCgUu-CGGUGCC-----------GUGGCGGCGguu -5'
19561 3' -62.5 NC_004686.1 + 14510 0.67 0.27953
Target:  5'- aUCCG-GAGCCGUGGCGCgGC-GCCAAc -3'
miRNA:   3'- -AGGCgUUCGGUGCCGUGgCGgCGGUU- -5'
19561 3' -62.5 NC_004686.1 + 34732 0.67 0.277486
Target:  5'- gUUCGCcGGCUACGGCaACCGCaaggaacgucucuaCGCCu- -3'
miRNA:   3'- -AGGCGuUCGGUGCCG-UGGCG--------------GCGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.