miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19570 5' -53 NC_004686.1 + 8798 0.66 0.86038
Target:  5'- -cGGAGAUCGcGCAGgCCAaggccgaguggGAUCGGg -3'
miRNA:   3'- caCUUCUAGC-CGUUgGGUg----------CUAGCCg -5'
19570 5' -53 NC_004686.1 + 26706 0.66 0.86038
Target:  5'- -cGGAGGcagCGuCGGCCCGggcugcgguuCGAUCGGCg -3'
miRNA:   3'- caCUUCUa--GCcGUUGGGU----------GCUAGCCG- -5'
19570 5' -53 NC_004686.1 + 35524 0.66 0.86038
Target:  5'- gGUGAguGGGUgaaUGGUgAGCCCACGGUgCGGa -3'
miRNA:   3'- -CACU--UCUA---GCCG-UUGGGUGCUA-GCCg -5'
19570 5' -53 NC_004686.1 + 49837 0.66 0.851945
Target:  5'- -gGAgcuGGAUCGGggcaucgccaUAACCCGCGuggcCGGCu -3'
miRNA:   3'- caCU---UCUAGCC----------GUUGGGUGCua--GCCG- -5'
19570 5' -53 NC_004686.1 + 51234 0.66 0.851945
Target:  5'- aUGAucccCGGCAG-CCACGAaCGGCu -3'
miRNA:   3'- cACUucuaGCCGUUgGGUGCUaGCCG- -5'
19570 5' -53 NC_004686.1 + 28755 0.66 0.843274
Target:  5'- uUGggGGgcgCGGUGAUgCGCGGguuuuaugCGGCg -3'
miRNA:   3'- cACuuCUa--GCCGUUGgGUGCUa-------GCCG- -5'
19570 5' -53 NC_004686.1 + 9688 0.66 0.843274
Target:  5'- -gGGAGGUagCGaGCAGCCCGacagCGGCa -3'
miRNA:   3'- caCUUCUA--GC-CGUUGGGUgcuaGCCG- -5'
19570 5' -53 NC_004686.1 + 11039 0.66 0.825262
Target:  5'- ----cGAUCGGUGGCCCcggccCGAagGGCa -3'
miRNA:   3'- cacuuCUAGCCGUUGGGu----GCUagCCG- -5'
19570 5' -53 NC_004686.1 + 42895 0.66 0.825262
Target:  5'- cGUGAAc--CGGCGACUCAUGA--GGCg -3'
miRNA:   3'- -CACUUcuaGCCGUUGGGUGCUagCCG- -5'
19570 5' -53 NC_004686.1 + 42360 0.66 0.815939
Target:  5'- uGUGgcGGgcagUGGCGAgguUCCACaGAUCGGUg -3'
miRNA:   3'- -CACuuCUa---GCCGUU---GGGUG-CUAGCCG- -5'
19570 5' -53 NC_004686.1 + 14595 0.67 0.806419
Target:  5'- -cGGAGGUUGGCG--CCGCGccaCGGCu -3'
miRNA:   3'- caCUUCUAGCCGUugGGUGCua-GCCG- -5'
19570 5' -53 NC_004686.1 + 14715 0.67 0.806419
Target:  5'- aUGAAGucGUCGGCgAACUCGgCGA-CGGUg -3'
miRNA:   3'- cACUUC--UAGCCG-UUGGGU-GCUaGCCG- -5'
19570 5' -53 NC_004686.1 + 34997 0.67 0.805457
Target:  5'- ------cUUGGCAACCCAguagggcUGAUCGGUg -3'
miRNA:   3'- cacuucuAGCCGUUGGGU-------GCUAGCCG- -5'
19570 5' -53 NC_004686.1 + 43410 0.67 0.805457
Target:  5'- uUGggGAUCucauguuGGCAcCCC-CGAUUGGa -3'
miRNA:   3'- cACuuCUAG-------CCGUuGGGuGCUAGCCg -5'
19570 5' -53 NC_004686.1 + 35272 0.67 0.796712
Target:  5'- uUGGAGuuGUCGGUu-CCgGCG-UCGGCg -3'
miRNA:   3'- cACUUC--UAGCCGuuGGgUGCuAGCCG- -5'
19570 5' -53 NC_004686.1 + 47527 0.67 0.790803
Target:  5'- --cAAGAuccuUCGGCAAcggacgaaacccgcuCCCAUGAUCGGa -3'
miRNA:   3'- cacUUCU----AGCCGUU---------------GGGUGCUAGCCg -5'
19570 5' -53 NC_004686.1 + 10988 0.67 0.78683
Target:  5'- cUGAGGAUUGGaAGCguCCACGuuUCGGUg -3'
miRNA:   3'- cACUUCUAGCCgUUG--GGUGCu-AGCCG- -5'
19570 5' -53 NC_004686.1 + 36890 0.67 0.776783
Target:  5'- ----cGAUgGGCGAUCCACGucucccaCGGCg -3'
miRNA:   3'- cacuuCUAgCCGUUGGGUGCua-----GCCG- -5'
19570 5' -53 NC_004686.1 + 36814 0.67 0.776783
Target:  5'- -gGGAGAcgUGGaucGCCCAuCGGUUGGCa -3'
miRNA:   3'- caCUUCUa-GCCgu-UGGGU-GCUAGCCG- -5'
19570 5' -53 NC_004686.1 + 27436 0.67 0.776783
Target:  5'- -cGggGucucauguUCGGCAACCCGCGc-CGcGCc -3'
miRNA:   3'- caCuuCu-------AGCCGUUGGGUGCuaGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.