miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19578 5' -56 NC_004686.1 + 25649 0.66 0.681645
Target:  5'- gGCCGGCGgacUCGUGGCcGAucUGGCUGUa -3'
miRNA:   3'- -UGGUCGC---GGCGCCGaCUuaGUUGACG- -5'
19578 5' -56 NC_004686.1 + 49878 0.66 0.680552
Target:  5'- cGCCGGCgacgaagGCCGCGGCgaacGAUCAucgagaucACcGCg -3'
miRNA:   3'- -UGGUCG-------CGGCGCCGac--UUAGU--------UGaCG- -5'
19578 5' -56 NC_004686.1 + 22663 0.66 0.678365
Target:  5'- cACCGGUcccgacaagggcugGCCGcCGGUgauggUGAGggCGGCUGCg -3'
miRNA:   3'- -UGGUCG--------------CGGC-GCCG-----ACUUa-GUUGACG- -5'
19578 5' -56 NC_004686.1 + 21172 0.66 0.670695
Target:  5'- uCC-GCGCCGCGGgggcuggcaCUGGuUCAGC-GCa -3'
miRNA:   3'- uGGuCGCGGCGCC---------GACUuAGUUGaCG- -5'
19578 5' -56 NC_004686.1 + 22026 0.66 0.65971
Target:  5'- -aCGGCGCCGaCGGCggcGcGUCGACa-- -3'
miRNA:   3'- ugGUCGCGGC-GCCGa--CuUAGUUGacg -5'
19578 5' -56 NC_004686.1 + 39760 0.66 0.648698
Target:  5'- gGCUu-CGCCGCGGCUGAugccguGCcGCa -3'
miRNA:   3'- -UGGucGCGGCGCCGACUuagu--UGaCG- -5'
19578 5' -56 NC_004686.1 + 47408 0.66 0.637671
Target:  5'- -aCGGUGgCGCGGU----UCGGCUGCg -3'
miRNA:   3'- ugGUCGCgGCGCCGacuuAGUUGACG- -5'
19578 5' -56 NC_004686.1 + 3547 0.66 0.637671
Target:  5'- uUCAGgGCCGCGGCac-----GCUGCa -3'
miRNA:   3'- uGGUCgCGGCGCCGacuuaguUGACG- -5'
19578 5' -56 NC_004686.1 + 31748 0.66 0.626639
Target:  5'- -aCGGUGCUGCGGUcGAAUgGugUGg -3'
miRNA:   3'- ugGUCGCGGCGCCGaCUUAgUugACg -5'
19578 5' -56 NC_004686.1 + 22315 0.66 0.626639
Target:  5'- cGCCAGCGcCCGCGccGUUGGuu---CUGCu -3'
miRNA:   3'- -UGGUCGC-GGCGC--CGACUuaguuGACG- -5'
19578 5' -56 NC_004686.1 + 14585 0.66 0.626639
Target:  5'- cGCC-GCGCCaCGGCUccGGAUCGcCUGg -3'
miRNA:   3'- -UGGuCGCGGcGCCGA--CUUAGUuGACg -5'
19578 5' -56 NC_004686.1 + 35286 0.66 0.625536
Target:  5'- uCCGGCGUCGgcguggaaugagcUGGCUGAG---GCUGCc -3'
miRNA:   3'- uGGUCGCGGC-------------GCCGACUUaguUGACG- -5'
19578 5' -56 NC_004686.1 + 56120 0.67 0.615612
Target:  5'- cGCCAgGCGaCGCGGCcGggUUGGCgggUGCc -3'
miRNA:   3'- -UGGU-CGCgGCGCCGaCuuAGUUG---ACG- -5'
19578 5' -56 NC_004686.1 + 39769 0.67 0.6046
Target:  5'- uACaCGGaCGCCGCGGCgacGGUgGGgUGCa -3'
miRNA:   3'- -UG-GUC-GCGGCGCCGac-UUAgUUgACG- -5'
19578 5' -56 NC_004686.1 + 22051 0.67 0.593611
Target:  5'- cGCCAGCGCCGCc---GAGUCcGC-GCg -3'
miRNA:   3'- -UGGUCGCGGCGccgaCUUAGuUGaCG- -5'
19578 5' -56 NC_004686.1 + 26693 0.67 0.582655
Target:  5'- gGCCcGgGCUGCGGUUcGAUCGGCgggUGCu -3'
miRNA:   3'- -UGGuCgCGGCGCCGAcUUAGUUG---ACG- -5'
19578 5' -56 NC_004686.1 + 7773 0.68 0.560875
Target:  5'- gACCGGC-CUGCGGCccacacauucuuUGAAUCGGCcaugaugGCu -3'
miRNA:   3'- -UGGUCGcGGCGCCG------------ACUUAGUUGa------CG- -5'
19578 5' -56 NC_004686.1 + 48307 0.68 0.550068
Target:  5'- gACCGG-GCaGCGGCUccccggacGAAUCGuguuGCUGCa -3'
miRNA:   3'- -UGGUCgCGgCGCCGA--------CUUAGU----UGACG- -5'
19578 5' -56 NC_004686.1 + 31250 0.68 0.539325
Target:  5'- gACCAGUGUC-CGGCUu--UCAACaUGCu -3'
miRNA:   3'- -UGGUCGCGGcGCCGAcuuAGUUG-ACG- -5'
19578 5' -56 NC_004686.1 + 3292 0.68 0.539325
Target:  5'- cGCCGGCGCUGCGGaaGGcguUCAuucgUGCu -3'
miRNA:   3'- -UGGUCGCGGCGCCgaCUu--AGUug--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.