miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19584 3' -57.9 NC_004686.1 + 10421 0.66 0.597295
Target:  5'- uGGCAG-GCCGAuauCCGCggggaCCACGACAc- -3'
miRNA:   3'- gCCGUCgUGGCU---GGUG-----GGUGCUGUug -5'
19584 3' -57.9 NC_004686.1 + 48764 0.66 0.597295
Target:  5'- uGGCGGUAauCCaACUACCCgaaGCGACAuACg -3'
miRNA:   3'- gCCGUCGU--GGcUGGUGGG---UGCUGU-UG- -5'
19584 3' -57.9 NC_004686.1 + 22680 0.66 0.597295
Target:  5'- cCGGCGGUgggGgUGACCACCgGuccCGACAAg -3'
miRNA:   3'- -GCCGUCG---UgGCUGGUGGgU---GCUGUUg -5'
19584 3' -57.9 NC_004686.1 + 21981 0.66 0.59407
Target:  5'- uCGGCGGCGCUGGCgGugccaaggcguauuCCgGUGACGGCa -3'
miRNA:   3'- -GCCGUCGUGGCUGgU--------------GGgUGCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 22342 0.66 0.586557
Target:  5'- uGGaCAGCuuGCCGccGCCGCCCuuacCGcCAGCg -3'
miRNA:   3'- gCC-GUCG--UGGC--UGGUGGGu---GCuGUUG- -5'
19584 3' -57.9 NC_004686.1 + 5995 0.66 0.575856
Target:  5'- cCGGCAGCcgauagccACCGGCCAgacgcgcauccuUCUugGACucGGCg -3'
miRNA:   3'- -GCCGUCG--------UGGCUGGU------------GGGugCUG--UUG- -5'
19584 3' -57.9 NC_004686.1 + 39689 0.66 0.575856
Target:  5'- uGGCGauGuCGCCGGugguCCAaccguUCCACGACAACg -3'
miRNA:   3'- gCCGU--C-GUGGCU----GGU-----GGGUGCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 13544 0.66 0.575856
Target:  5'- -uGCGGCACgGcACCAUCCGCG-CcGCa -3'
miRNA:   3'- gcCGUCGUGgC-UGGUGGGUGCuGuUG- -5'
19584 3' -57.9 NC_004686.1 + 47729 0.66 0.575856
Target:  5'- uCGGCcGCACaaa-CACCCGCGGCu-- -3'
miRNA:   3'- -GCCGuCGUGgcugGUGGGUGCUGuug -5'
19584 3' -57.9 NC_004686.1 + 51612 0.66 0.565199
Target:  5'- uGGCGGCGuuGAgCGcguCCCACGccGCGAUc -3'
miRNA:   3'- gCCGUCGUggCUgGU---GGGUGC--UGUUG- -5'
19584 3' -57.9 NC_004686.1 + 18911 0.66 0.565199
Target:  5'- uGGCGgucucgucgcGCACCG-CCGCCguCGACuuCa -3'
miRNA:   3'- gCCGU----------CGUGGCuGGUGGguGCUGuuG- -5'
19584 3' -57.9 NC_004686.1 + 38736 0.66 0.565199
Target:  5'- gGGCAauaCACCGAuuCCGCa-GCGGCGACg -3'
miRNA:   3'- gCCGUc--GUGGCU--GGUGggUGCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 38761 0.66 0.565199
Target:  5'- uGGCGccGCAaagccUUGugCACCCAUGAgGACg -3'
miRNA:   3'- gCCGU--CGU-----GGCugGUGGGUGCUgUUG- -5'
19584 3' -57.9 NC_004686.1 + 7877 0.66 0.565199
Target:  5'- cCGGCAcCACaaucaaGACUACgCAgGACAACu -3'
miRNA:   3'- -GCCGUcGUGg-----CUGGUGgGUgCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 14916 0.66 0.558829
Target:  5'- gGGCGGCACgGucgaCACCCuacucaagccccucuACGAgGACa -3'
miRNA:   3'- gCCGUCGUGgCug--GUGGG---------------UGCUgUUG- -5'
19584 3' -57.9 NC_004686.1 + 21938 0.66 0.554594
Target:  5'- cCGGaguucgAGCGCCGuccggagccGCCGCCCGCGcCcGCg -3'
miRNA:   3'- -GCCg-----UCGUGGC---------UGGUGGGUGCuGuUG- -5'
19584 3' -57.9 NC_004686.1 + 36444 0.66 0.554594
Target:  5'- cCGGCAGCGCgucgaguucuuCGACggucucaauCACCCugGgacGCAGCc -3'
miRNA:   3'- -GCCGUCGUG-----------GCUG---------GUGGGugC---UGUUG- -5'
19584 3' -57.9 NC_004686.1 + 31298 0.66 0.554594
Target:  5'- aCGGCA--ACCuGCgCGCCCgcaGCGACGACg -3'
miRNA:   3'- -GCCGUcgUGGcUG-GUGGG---UGCUGUUG- -5'
19584 3' -57.9 NC_004686.1 + 33781 0.66 0.554594
Target:  5'- uCGGcCAGUuCCGucguaCGCCCACGcCGGCg -3'
miRNA:   3'- -GCC-GUCGuGGCug---GUGGGUGCuGUUG- -5'
19584 3' -57.9 NC_004686.1 + 52981 0.66 0.554594
Target:  5'- gGGCAGCAUCucCCAgcugaUCCugGACcGCa -3'
miRNA:   3'- gCCGUCGUGGcuGGU-----GGGugCUGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.