miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19593 5' -64.6 NC_004686.1 + 3259 0.66 0.314909
Target:  5'- aGaaAUCGCCACCGCCGUauCCGg-- -3'
miRNA:   3'- gCggUGGCGGUGGCGGCGgcGGCauc -5'
19593 5' -64.6 NC_004686.1 + 6013 0.66 0.314909
Target:  5'- uCGCCGCUGCaCGuuUCGCCGgCaGCCGaUAGc -3'
miRNA:   3'- -GCGGUGGCG-GU--GGCGGCgG-CGGC-AUC- -5'
19593 5' -64.6 NC_004686.1 + 16591 0.66 0.314909
Target:  5'- gCGUaCACCGUCGuuGaaGUCGUCGUAGa -3'
miRNA:   3'- -GCG-GUGGCGGUggCggCGGCGGCAUC- -5'
19593 5' -64.6 NC_004686.1 + 14683 0.66 0.307724
Target:  5'- gGCCAguCCGUCAaaugCGgUGCCGCCGuUGGa -3'
miRNA:   3'- gCGGU--GGCGGUg---GCgGCGGCGGC-AUC- -5'
19593 5' -64.6 NC_004686.1 + 27403 0.66 0.300666
Target:  5'- gCGCCGCUGCacuaccgGCuCGCCGacuuCCGCCGg-- -3'
miRNA:   3'- -GCGGUGGCGg------UG-GCGGC----GGCGGCauc -5'
19593 5' -64.6 NC_004686.1 + 5613 0.66 0.293733
Target:  5'- cCGCCAcggacgguguCCGaCACCGCCGCguucagGCCGgcGa -3'
miRNA:   3'- -GCGGU----------GGCgGUGGCGGCGg-----CGGCauC- -5'
19593 5' -64.6 NC_004686.1 + 47335 0.66 0.293733
Target:  5'- aGCCGaaccgCGCCACCGUCGa-GgCGUGGg -3'
miRNA:   3'- gCGGUg----GCGGUGGCGGCggCgGCAUC- -5'
19593 5' -64.6 NC_004686.1 + 23705 0.66 0.286926
Target:  5'- aCGCCACCGgUgguGuaGCCGuuGCCGUu- -3'
miRNA:   3'- -GCGGUGGCgG---UggCGGCggCGGCAuc -5'
19593 5' -64.6 NC_004686.1 + 28031 0.66 0.280243
Target:  5'- aGCCGCUgaagcgguguugGCguCCGUCGgcaucuCCGCCGUAGa -3'
miRNA:   3'- gCGGUGG------------CGguGGCGGC------GGCGGCAUC- -5'
19593 5' -64.6 NC_004686.1 + 8442 0.66 0.280243
Target:  5'- -cCCACUGUCGgugUCGuuGCCGCgGUGGg -3'
miRNA:   3'- gcGGUGGCGGU---GGCggCGGCGgCAUC- -5'
19593 5' -64.6 NC_004686.1 + 38534 0.66 0.280243
Target:  5'- aCGCCAUCGUCACCGCCaaaaaagucugcGCCcuccucgacGCUGg-- -3'
miRNA:   3'- -GCGGUGGCGGUGGCGG------------CGG---------CGGCauc -5'
19593 5' -64.6 NC_004686.1 + 34783 0.66 0.280243
Target:  5'- uGCCGCUGCCACCGauuCGCUucgGCUuGUGa -3'
miRNA:   3'- gCGGUGGCGGUGGCg--GCGG---CGG-CAUc -5'
19593 5' -64.6 NC_004686.1 + 42845 0.66 0.280243
Target:  5'- aGCCcgcGCCGCCAaCGCCuCCugaaCCGUAGg -3'
miRNA:   3'- gCGG---UGGCGGUgGCGGcGGc---GGCAUC- -5'
19593 5' -64.6 NC_004686.1 + 22751 0.66 0.280243
Target:  5'- gCGCCGCgGCUAUCGCgGUCaCCgGUGGu -3'
miRNA:   3'- -GCGGUGgCGGUGGCGgCGGcGG-CAUC- -5'
19593 5' -64.6 NC_004686.1 + 45704 0.67 0.26725
Target:  5'- gGCCACUGCaugauCACCGuuGCuugCGCCGa-- -3'
miRNA:   3'- gCGGUGGCG-----GUGGCggCG---GCGGCauc -5'
19593 5' -64.6 NC_004686.1 + 22608 0.67 0.260938
Target:  5'- gGUCACCcCCACCGCCGggcagaUCGCCa--- -3'
miRNA:   3'- gCGGUGGcGGUGGCGGC------GGCGGcauc -5'
19593 5' -64.6 NC_004686.1 + 19289 0.67 0.254748
Target:  5'- uGUCGCCaCCAUUGCCGCCcacacCCGUAc -3'
miRNA:   3'- gCGGUGGcGGUGGCGGCGGc----GGCAUc -5'
19593 5' -64.6 NC_004686.1 + 19442 0.67 0.254748
Target:  5'- uGCCcgcCCGCCaaauACUGCuCGCCGuuGUAc -3'
miRNA:   3'- gCGGu--GGCGG----UGGCG-GCGGCggCAUc -5'
19593 5' -64.6 NC_004686.1 + 31558 0.67 0.24868
Target:  5'- aCGUCAacaaCGCCugCaUCGCCGCCGa-- -3'
miRNA:   3'- -GCGGUg---GCGGugGcGGCGGCGGCauc -5'
19593 5' -64.6 NC_004686.1 + 54048 0.67 0.24868
Target:  5'- aCGCC-CCGCCACaccagCGCUGUuCGCCGc-- -3'
miRNA:   3'- -GCGGuGGCGGUG-----GCGGCG-GCGGCauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.