miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19697 5' -59.4 NC_004686.1 + 39046 0.65 0.53333
Target:  5'- gGGCACGGUucugcUCaccgaagugcaagaAGCgUGCGGCGAAuGCa -3'
miRNA:   3'- -CCGUGCCGu----AG--------------UCG-GCGCCGCUU-CGg -5'
19697 5' -59.4 NC_004686.1 + 2142 0.66 0.52613
Target:  5'- -uCGCGGCGaaCAGCgcuggUGUGGCGggGCg -3'
miRNA:   3'- ccGUGCCGUa-GUCG-----GCGCCGCuuCGg -5'
19697 5' -59.4 NC_004686.1 + 39788 0.66 0.52613
Target:  5'- gGGCGgGGCuAUCGGCuUGUGGgaccgugacgaCGAAGCa -3'
miRNA:   3'- -CCGUgCCG-UAGUCG-GCGCC-----------GCUUCGg -5'
19697 5' -59.4 NC_004686.1 + 54365 0.66 0.525104
Target:  5'- gGGCACGGCAcuggaguUCGGCguCG-GGCaGGGCa -3'
miRNA:   3'- -CCGUGCCGU-------AGUCG--GCgCCGcUUCGg -5'
19697 5' -59.4 NC_004686.1 + 3390 0.66 0.514889
Target:  5'- uGGCgggauccGCGGUAUCuGUCGaaguCGGCGcAGGCUg -3'
miRNA:   3'- -CCG-------UGCCGUAGuCGGC----GCCGC-UUCGG- -5'
19697 5' -59.4 NC_004686.1 + 16904 0.66 0.505765
Target:  5'- uGCACGGUG-CGGUgGUGGC--AGCCc -3'
miRNA:   3'- cCGUGCCGUaGUCGgCGCCGcuUCGG- -5'
19697 5' -59.4 NC_004686.1 + 22189 0.66 0.505765
Target:  5'- cGGCaACGGCggCAaCgGCGGCaGcAGCCc -3'
miRNA:   3'- -CCG-UGCCGuaGUcGgCGCCG-CuUCGG- -5'
19697 5' -59.4 NC_004686.1 + 245 0.66 0.49571
Target:  5'- aGGCgACGGUAUCGguccauguGCUGaUGGCGcGGUCg -3'
miRNA:   3'- -CCG-UGCCGUAGU--------CGGC-GCCGCuUCGG- -5'
19697 5' -59.4 NC_004686.1 + 1064 0.66 0.49571
Target:  5'- cGCACGGCGauggAGUCGUguucGGUGAuGGCCa -3'
miRNA:   3'- cCGUGCCGUag--UCGGCG----CCGCU-UCGG- -5'
19697 5' -59.4 NC_004686.1 + 24299 0.66 0.49571
Target:  5'- aGGCugGGCAgCGGUgGauuucgauuGUGGAGCCg -3'
miRNA:   3'- -CCGugCCGUaGUCGgCgc-------CGCUUCGG- -5'
19697 5' -59.4 NC_004686.1 + 4643 0.66 0.49571
Target:  5'- gGGCAUuuuuugagGGUGUUGGUgGCGGCGuuGAGCg -3'
miRNA:   3'- -CCGUG--------CCGUAGUCGgCGCCGC--UUCGg -5'
19697 5' -59.4 NC_004686.1 + 42735 0.66 0.49471
Target:  5'- cGGCACGGCAcCAuccgcGCCGCauccuuccccaucGG-GGAGCg -3'
miRNA:   3'- -CCGUGCCGUaGU-----CGGCG-------------CCgCUUCGg -5'
19697 5' -59.4 NC_004686.1 + 22538 0.66 0.491714
Target:  5'- aGCACGuccuccuacaacccGCcgCAGCCGCccucaccaucaccGGCGGccAGCCc -3'
miRNA:   3'- cCGUGC--------------CGuaGUCGGCG-------------CCGCU--UCGG- -5'
19697 5' -59.4 NC_004686.1 + 13251 0.66 0.485747
Target:  5'- -uCGCGGCGagAGCCGCcgagagccCGggGCCu -3'
miRNA:   3'- ccGUGCCGUagUCGGCGcc------GCuuCGG- -5'
19697 5' -59.4 NC_004686.1 + 12109 0.66 0.485747
Target:  5'- cGGCuaccGCGGCuUCGGCUGCcgcaacGGCG-GGCa -3'
miRNA:   3'- -CCG----UGCCGuAGUCGGCG------CCGCuUCGg -5'
19697 5' -59.4 NC_004686.1 + 26241 0.67 0.466113
Target:  5'- aGC-CGGgGUCGGUgugGCGGCGGcuuGCCg -3'
miRNA:   3'- cCGuGCCgUAGUCGg--CGCCGCUu--CGG- -5'
19697 5' -59.4 NC_004686.1 + 43543 0.67 0.466113
Target:  5'- aGGaCACGGCAgCGGCauugGUGGgGAguccucagugauAGCCa -3'
miRNA:   3'- -CC-GUGCCGUaGUCGg---CGCCgCU------------UCGG- -5'
19697 5' -59.4 NC_004686.1 + 38956 0.67 0.456451
Target:  5'- aGCGUGGCG--AGCUGgcacCGGUGAAGCCg -3'
miRNA:   3'- cCGUGCCGUagUCGGC----GCCGCUUCGG- -5'
19697 5' -59.4 NC_004686.1 + 9557 0.67 0.456451
Target:  5'- cGGcCugGGCAUCaaGGCCGguauUGGUGuuGCUg -3'
miRNA:   3'- -CC-GugCCGUAG--UCGGC----GCCGCuuCGG- -5'
19697 5' -59.4 NC_004686.1 + 5092 0.67 0.455491
Target:  5'- aGGCuguccaGGUA-CAGCCucGCGGCGGAcgagaauGCCg -3'
miRNA:   3'- -CCGug----CCGUaGUCGG--CGCCGCUU-------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.