miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19709 5' -57.3 NC_004686.1 + 20777 0.66 0.646105
Target:  5'- aCgGC-CCugCCGCuuaaACACCcaaCCGAUGCu -3'
miRNA:   3'- gGgCGaGGugGGUG----UGUGG---GGUUACG- -5'
19709 5' -57.3 NC_004686.1 + 53447 0.66 0.646105
Target:  5'- aCCGCUgugaccacaCCACCCaccagcaggcACACACCugCCAggGUg -3'
miRNA:   3'- gGGCGA---------GGUGGG----------UGUGUGG--GGUuaCG- -5'
19709 5' -57.3 NC_004686.1 + 53828 0.66 0.646105
Target:  5'- aCCCG-UCCACCCcaGCACCagaCCAAgguugaaguacUGCg -3'
miRNA:   3'- -GGGCgAGGUGGGugUGUGG---GGUU-----------ACG- -5'
19709 5' -57.3 NC_004686.1 + 26302 0.66 0.63533
Target:  5'- aUCCGUggCUGCCgACAaacaACgCCAAUGCg -3'
miRNA:   3'- -GGGCGa-GGUGGgUGUg---UGgGGUUACG- -5'
19709 5' -57.3 NC_004686.1 + 45780 0.66 0.63533
Target:  5'- cCCCGCggauaUCgGCCUGcCACGCCUCAAacuUGUu -3'
miRNA:   3'- -GGGCG-----AGgUGGGU-GUGUGGGGUU---ACG- -5'
19709 5' -57.3 NC_004686.1 + 32448 0.66 0.63533
Target:  5'- gCCGC-UgACCUcguagaGCACugCCCAgcGUGCg -3'
miRNA:   3'- gGGCGaGgUGGG------UGUGugGGGU--UACG- -5'
19709 5' -57.3 NC_004686.1 + 8848 0.66 0.63533
Target:  5'- aUCUGCUCaGCCCACGC-CUCgAcgGUg -3'
miRNA:   3'- -GGGCGAGgUGGGUGUGuGGGgUuaCG- -5'
19709 5' -57.3 NC_004686.1 + 29395 0.66 0.63533
Target:  5'- aCCCuCUCCcaACCCAacaUAUACCCCGuUGa -3'
miRNA:   3'- -GGGcGAGG--UGGGU---GUGUGGGGUuACg -5'
19709 5' -57.3 NC_004686.1 + 25267 0.66 0.63533
Target:  5'- gCCGaugagaUCGCCCaACGCAUCCCGaacGUGCc -3'
miRNA:   3'- gGGCga----GGUGGG-UGUGUGGGGU---UACG- -5'
19709 5' -57.3 NC_004686.1 + 32970 0.66 0.63533
Target:  5'- aCCCGCcCCACCagcuCACAgCCUAuuuaGCc -3'
miRNA:   3'- -GGGCGaGGUGGgu--GUGUgGGGUua--CG- -5'
19709 5' -57.3 NC_004686.1 + 52355 0.66 0.63533
Target:  5'- uUCCGCcacCCACCCggccaGCGCguagGCCCCAAg-- -3'
miRNA:   3'- -GGGCGa--GGUGGG-----UGUG----UGGGGUUacg -5'
19709 5' -57.3 NC_004686.1 + 12292 0.66 0.624552
Target:  5'- -gUGCUCCGCgCugGCugUCCAcggAUGUg -3'
miRNA:   3'- ggGCGAGGUGgGugUGugGGGU---UACG- -5'
19709 5' -57.3 NC_004686.1 + 10214 0.66 0.624552
Target:  5'- aUCCGuUUCCG-CCGCACACCUCAc--- -3'
miRNA:   3'- -GGGC-GAGGUgGGUGUGUGGGGUuacg -5'
19709 5' -57.3 NC_004686.1 + 4851 0.66 0.624552
Target:  5'- gCUGC-CCACCU--GCACUUCGAUGUa -3'
miRNA:   3'- gGGCGaGGUGGGugUGUGGGGUUACG- -5'
19709 5' -57.3 NC_004686.1 + 27550 0.66 0.613781
Target:  5'- gCCGCUUCACCUucCGCaACCUCucaGCa -3'
miRNA:   3'- gGGCGAGGUGGGu-GUG-UGGGGuuaCG- -5'
19709 5' -57.3 NC_004686.1 + 16882 0.66 0.613781
Target:  5'- aCCCGuCUUCGCgCggGCACGCUgCAcgGUGCg -3'
miRNA:   3'- -GGGC-GAGGUGgG--UGUGUGGgGU--UACG- -5'
19709 5' -57.3 NC_004686.1 + 56018 0.66 0.613781
Target:  5'- gUCGC-CCACCCGCccgGCACCCgcCAAcccgGCc -3'
miRNA:   3'- gGGCGaGGUGGGUG---UGUGGG--GUUa---CG- -5'
19709 5' -57.3 NC_004686.1 + 1820 0.66 0.603025
Target:  5'- uUuuGCcCUGCCCgACGCcgaACUCCAGUGCc -3'
miRNA:   3'- -GggCGaGGUGGG-UGUG---UGGGGUUACG- -5'
19709 5' -57.3 NC_004686.1 + 10638 0.66 0.603025
Target:  5'- uUCGCU-CGCCCaAUGCGCCCCucucugGCu -3'
miRNA:   3'- gGGCGAgGUGGG-UGUGUGGGGuua---CG- -5'
19709 5' -57.3 NC_004686.1 + 51266 0.67 0.592293
Target:  5'- cCCUGagcCUUCugCCACACGCCgggcaCCAgGUGCu -3'
miRNA:   3'- -GGGC---GAGGugGGUGUGUGG-----GGU-UACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.