miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19737 5' -54.3 NC_004687.1 + 10530 0.66 0.955222
Target:  5'- --uUGGUGAAgUUGGCGU-CG-GCCa -3'
miRNA:   3'- cguACCACUUgAACCGUAcGCgCGGc -5'
19737 5' -54.3 NC_004687.1 + 127181 0.66 0.951179
Target:  5'- cGguUGGccuUGAGCgugGGCA-GCGCgGCCa -3'
miRNA:   3'- -CguACC---ACUUGaa-CCGUaCGCG-CGGc -5'
19737 5' -54.3 NC_004687.1 + 135563 0.66 0.951179
Target:  5'- gGCuUGGUGAAC---GCAUGCGgGUCc -3'
miRNA:   3'- -CGuACCACUUGaacCGUACGCgCGGc -5'
19737 5' -54.3 NC_004687.1 + 136711 0.66 0.951179
Target:  5'- cCGUGGUGGcCUgucaGGUcgacagaaGCGCGCCGa -3'
miRNA:   3'- cGUACCACUuGAa---CCGua------CGCGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 114174 0.66 0.951179
Target:  5'- aCAUGGcaacUGGuUUUGGCGcgaugaaGCGCGCCGu -3'
miRNA:   3'- cGUACC----ACUuGAACCGUa------CGCGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 142315 0.66 0.9469
Target:  5'- aGCGcGGUcggGGACUUGGacuggaCGUGCGCgGCCu -3'
miRNA:   3'- -CGUaCCA---CUUGAACC------GUACGCG-CGGc -5'
19737 5' -54.3 NC_004687.1 + 48241 0.66 0.94238
Target:  5'- aCGUGGccGGACgccgGGCcgGUGCGCaCGu -3'
miRNA:   3'- cGUACCa-CUUGaa--CCGuaCGCGCG-GC- -5'
19737 5' -54.3 NC_004687.1 + 49595 0.66 0.94238
Target:  5'- ---cGGUGAACUcgGGCcccgGCGCCGa -3'
miRNA:   3'- cguaCCACUUGAa-CCGuacgCGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 112067 0.66 0.937618
Target:  5'- uGCAUGGUGAGgUaaGCG-GCGUaGCCGu -3'
miRNA:   3'- -CGUACCACUUgAacCGUaCGCG-CGGC- -5'
19737 5' -54.3 NC_004687.1 + 54822 0.66 0.937618
Target:  5'- gGCggGGUGAAgUguccGGUGUGCG-GCCa -3'
miRNA:   3'- -CGuaCCACUUgAa---CCGUACGCgCGGc -5'
19737 5' -54.3 NC_004687.1 + 36294 0.66 0.937618
Target:  5'- aGCcgGGcGAACUUGGUgAUG-GCGuuGg -3'
miRNA:   3'- -CGuaCCaCUUGAACCG-UACgCGCggC- -5'
19737 5' -54.3 NC_004687.1 + 100740 0.66 0.937129
Target:  5'- ---cGGccaUGAGCUUGGCGUagucgaaGCGCuuGCCGa -3'
miRNA:   3'- cguaCC---ACUUGAACCGUA-------CGCG--CGGC- -5'
19737 5' -54.3 NC_004687.1 + 112597 0.66 0.937129
Target:  5'- ---cGGUGAGCUgguugggUGGCAaGCGCgaGCUGu -3'
miRNA:   3'- cguaCCACUUGA-------ACCGUaCGCG--CGGC- -5'
19737 5' -54.3 NC_004687.1 + 27170 0.67 0.932611
Target:  5'- cGCGUGGUGug---GGCcgGUGacuaCGCCGa -3'
miRNA:   3'- -CGUACCACuugaaCCGuaCGC----GCGGC- -5'
19737 5' -54.3 NC_004687.1 + 13090 0.67 0.927359
Target:  5'- aGCAcGGUGAGC-UGGCcguaguuguugGUGCccauGUGCCGc -3'
miRNA:   3'- -CGUaCCACUUGaACCG-----------UACG----CGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 26598 0.67 0.927359
Target:  5'- cGCcgGGUGAcgACggcaaaGGCuggGaCGCGCCGu -3'
miRNA:   3'- -CGuaCCACU--UGaa----CCGua-C-GCGCGGC- -5'
19737 5' -54.3 NC_004687.1 + 110222 0.67 0.927359
Target:  5'- aCggGGUGAACUUcagcGGCuccUGCGgGCCc -3'
miRNA:   3'- cGuaCCACUUGAA----CCGu--ACGCgCGGc -5'
19737 5' -54.3 NC_004687.1 + 139658 0.67 0.921861
Target:  5'- ---cGGUGcgGGCUaGGCGUcGCGCGCgGg -3'
miRNA:   3'- cguaCCAC--UUGAaCCGUA-CGCGCGgC- -5'
19737 5' -54.3 NC_004687.1 + 33620 0.67 0.910128
Target:  5'- uCAUGGUGGcCcacGGUGUGgGCGCCu -3'
miRNA:   3'- cGUACCACUuGaa-CCGUACgCGCGGc -5'
19737 5' -54.3 NC_004687.1 + 34167 0.67 0.910128
Target:  5'- cGCAggUGGUGucCUgcgGGUcuuggGCGUGCCGg -3'
miRNA:   3'- -CGU--ACCACuuGAa--CCGua---CGCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.