miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19738 5' -61.4 NC_004687.1 + 145255 0.66 0.695084
Target:  5'- cGCGCUCAUgGUGCUGCagaagauccccgaaGAGGUccucaaggccuGGCa- -3'
miRNA:   3'- -CGCGAGUGgCACGGCG--------------CUCCG-----------UCGca -5'
19738 5' -61.4 NC_004687.1 + 119884 0.66 0.688271
Target:  5'- -aGCUCGCCGccccggGCCGCucGGCuuGGUGg -3'
miRNA:   3'- cgCGAGUGGCa-----CGGCGcuCCG--UCGCa -5'
19738 5' -61.4 NC_004687.1 + 53042 0.66 0.688271
Target:  5'- cCGagaUCAa-GUGCCGCGAGGcCGGgGUa -3'
miRNA:   3'- cGCg--AGUggCACGGCGCUCC-GUCgCA- -5'
19738 5' -61.4 NC_004687.1 + 135556 0.66 0.688271
Target:  5'- cCGCUgGCCcugGCCGC-AGuGCGGCGg -3'
miRNA:   3'- cGCGAgUGGca-CGGCGcUC-CGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 81845 0.66 0.688271
Target:  5'- gGCGCU-GCCGaGUCGCG-GGCGGUc- -3'
miRNA:   3'- -CGCGAgUGGCaCGGCGCuCCGUCGca -5'
19738 5' -61.4 NC_004687.1 + 82138 0.66 0.678503
Target:  5'- aGCGCgacaggugGCCGUgGCgGUGGcGGCGGCGg -3'
miRNA:   3'- -CGCGag------UGGCA-CGgCGCU-CCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 135316 0.66 0.678503
Target:  5'- cGCGCuggaucUCAuCCGUGCCGaGcuGCAGCGc -3'
miRNA:   3'- -CGCG------AGU-GGCACGGCgCucCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 140370 0.66 0.678503
Target:  5'- cGUGgUCGCgCGUGaCCGacauGGCAGCGg -3'
miRNA:   3'- -CGCgAGUG-GCAC-GGCgcu-CCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 20371 0.66 0.668698
Target:  5'- uGCGUUCACCaagcccGCCGCccacGGCGGCa- -3'
miRNA:   3'- -CGCGAGUGGca----CGGCGcu--CCGUCGca -5'
19738 5' -61.4 NC_004687.1 + 101529 0.66 0.668698
Target:  5'- cGCGUUgACCGUGUCGguggcggacacCGGuucggcggucccGGCGGCGUa -3'
miRNA:   3'- -CGCGAgUGGCACGGC-----------GCU------------CCGUCGCA- -5'
19738 5' -61.4 NC_004687.1 + 3364 0.66 0.668698
Target:  5'- cGCGCaUCACCuUGcCCGCGAacGGCgaGGCa- -3'
miRNA:   3'- -CGCG-AGUGGcAC-GGCGCU--CCG--UCGca -5'
19738 5' -61.4 NC_004687.1 + 62730 0.66 0.668698
Target:  5'- aCGCuUCGCCGccuggcggUGCCGCGcuguGGCcGCGa -3'
miRNA:   3'- cGCG-AGUGGC--------ACGGCGCu---CCGuCGCa -5'
19738 5' -61.4 NC_004687.1 + 148153 0.66 0.668698
Target:  5'- uUGCgCACCGUGgccuggaacuccUCGCuGGGCAGCGa -3'
miRNA:   3'- cGCGaGUGGCAC------------GGCGcUCCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 7926 0.66 0.658867
Target:  5'- -aGCUgACCGacuacaaccUGCCGCGucccGGCGGCu- -3'
miRNA:   3'- cgCGAgUGGC---------ACGGCGCu---CCGUCGca -5'
19738 5' -61.4 NC_004687.1 + 149511 0.66 0.658867
Target:  5'- aGUGUUCGacaGUGCCGCccAGGUGGCGa -3'
miRNA:   3'- -CGCGAGUgg-CACGGCGc-UCCGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 130021 0.66 0.658867
Target:  5'- gGCGCg-ACCGaUGUCGUGAGacaacugcaGCAGCGa -3'
miRNA:   3'- -CGCGagUGGC-ACGGCGCUC---------CGUCGCa -5'
19738 5' -61.4 NC_004687.1 + 67632 0.66 0.658867
Target:  5'- cGUGCUCcuGCgCGgugGCCGCGuAGGCGuagaccGCGUu -3'
miRNA:   3'- -CGCGAG--UG-GCa--CGGCGC-UCCGU------CGCA- -5'
19738 5' -61.4 NC_004687.1 + 41929 0.66 0.658867
Target:  5'- uGCGCUCuGCCGaUGCCGaacAGGCcaagcagaccGGCGg -3'
miRNA:   3'- -CGCGAG-UGGC-ACGGCgc-UCCG----------UCGCa -5'
19738 5' -61.4 NC_004687.1 + 70101 0.66 0.652958
Target:  5'- gGUGC-CACCGgcagagcagGCCGCGAagaacucacggaugcGGguGCGg -3'
miRNA:   3'- -CGCGaGUGGCa--------CGGCGCU---------------CCguCGCa -5'
19738 5' -61.4 NC_004687.1 + 41353 0.66 0.649015
Target:  5'- cGCGggCAUCGUG-CGCGAGGUcGCa- -3'
miRNA:   3'- -CGCgaGUGGCACgGCGCUCCGuCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.