miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19739 5' -63.7 NC_004687.1 + 22209 0.66 0.577061
Target:  5'- -aGGuCGugGGccacauGGugGGCCAGGGUUg- -3'
miRNA:   3'- ugCC-GCugCU------CCugCCGGUCCCGGua -5'
19739 5' -63.7 NC_004687.1 + 147044 0.66 0.577061
Target:  5'- -aGGCGAUguuggacgaacaGAGGACGucauucugccaGCCGGGGCUc- -3'
miRNA:   3'- ugCCGCUG------------CUCCUGC-----------CGGUCCCGGua -5'
19739 5' -63.7 NC_004687.1 + 63185 0.66 0.577061
Target:  5'- cGCGGacuguaGACGAccGCGcGCCuGGGCCAg -3'
miRNA:   3'- -UGCCg-----CUGCUccUGC-CGGuCCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 16739 0.66 0.574162
Target:  5'- uGCGcGCGACGAacuugaGG-UGGCCguugggggucagguAGGGCCAg -3'
miRNA:   3'- -UGC-CGCUGCU------CCuGCCGG--------------UCCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 90870 0.66 0.574162
Target:  5'- uCGGCgGACGcGGACGGggcaccgaucaggcCCAGGGUgAUa -3'
miRNA:   3'- uGCCG-CUGCuCCUGCC--------------GGUCCCGgUA- -5'
19739 5' -63.7 NC_004687.1 + 151512 0.66 0.567409
Target:  5'- cCGuGUGGCGAGGacgagaugGCGGUCuacuuccGGGCCAUg -3'
miRNA:   3'- uGC-CGCUGCUCC--------UGCCGGu------CCCGGUA- -5'
19739 5' -63.7 NC_004687.1 + 100407 0.66 0.567409
Target:  5'- uGCGGUGACGAccAgGGCUAGcGCCGUa -3'
miRNA:   3'- -UGCCGCUGCUccUgCCGGUCcCGGUA- -5'
19739 5' -63.7 NC_004687.1 + 35466 0.66 0.560677
Target:  5'- uCGGCGACcagauccgcaccgGuAGGACGaaccgcuugcccugaGCCAGGGCCc- -3'
miRNA:   3'- uGCCGCUG-------------C-UCCUGC---------------CGGUCCCGGua -5'
19739 5' -63.7 NC_004687.1 + 138984 0.66 0.557798
Target:  5'- gGCGGCGGCaGcGGA-GGcCCGGGuGCCGg -3'
miRNA:   3'- -UGCCGCUG-CuCCUgCC-GGUCC-CGGUa -5'
19739 5' -63.7 NC_004687.1 + 16104 0.66 0.557798
Target:  5'- cACGGUGuAUGucG-UGGUCAGGGCCAc -3'
miRNA:   3'- -UGCCGC-UGCucCuGCCGGUCCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 70038 0.66 0.548234
Target:  5'- aACGcCGGUGAGGACGGCgA-GGCCAa -3'
miRNA:   3'- -UGCcGCUGCUCCUGCCGgUcCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 64179 0.66 0.548234
Target:  5'- cCGGCGAgCGccAGG-CGGUgCAGGGCCu- -3'
miRNA:   3'- uGCCGCU-GC--UCCuGCCG-GUCCCGGua -5'
19739 5' -63.7 NC_004687.1 + 68127 0.66 0.548234
Target:  5'- cCGGCuACaAGcacGACGGCCuGGGCCAc -3'
miRNA:   3'- uGCCGcUGcUC---CUGCCGGuCCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 131099 0.66 0.548234
Target:  5'- cACGGCGGCGGuGACcGCCu-GGCCGa -3'
miRNA:   3'- -UGCCGCUGCUcCUGcCGGucCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 5472 0.66 0.538721
Target:  5'- uCGaaGACGAGGACGGCgAcgucuucuGGGCCu- -3'
miRNA:   3'- uGCcgCUGCUCCUGCCGgU--------CCCGGua -5'
19739 5' -63.7 NC_004687.1 + 19616 0.66 0.538721
Target:  5'- cGCGGCgGGCcuGGACGuCCuGGGCCGg -3'
miRNA:   3'- -UGCCG-CUGcuCCUGCcGGuCCCGGUa -5'
19739 5' -63.7 NC_004687.1 + 88047 0.66 0.538721
Target:  5'- cCGGCGcCGAGG-UGGCCcgucuggaGGaGGCCAc -3'
miRNA:   3'- uGCCGCuGCUCCuGCCGG--------UC-CCGGUa -5'
19739 5' -63.7 NC_004687.1 + 61607 0.66 0.538721
Target:  5'- -aGGUGGuCGcGGuCGGUguGGGCCAUg -3'
miRNA:   3'- ugCCGCU-GCuCCuGCCGguCCCGGUA- -5'
19739 5' -63.7 NC_004687.1 + 551 0.66 0.538721
Target:  5'- gGCaGCGGCGGGGGCGGgguGGGCa-- -3'
miRNA:   3'- -UGcCGCUGCUCCUGCCgguCCCGgua -5'
19739 5' -63.7 NC_004687.1 + 4583 0.66 0.529266
Target:  5'- uGCGGCGGCgcaccucggggGAGGACugaugaacuGGCCAGcGGUCc- -3'
miRNA:   3'- -UGCCGCUG-----------CUCCUG---------CCGGUC-CCGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.