miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19741 5' -57.5 NC_004687.1 + 48694 0.66 0.871771
Target:  5'- cGGCGGCUUguaggCGAUGACGucccagaaccgaucgGCAuaGGCCAg -3'
miRNA:   3'- -CUGCCGAG-----GCUACUGC---------------UGUucCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 81800 0.66 0.868855
Target:  5'- gGugGGCUCUGAgcgcgucgUGGCGcCAcucuGGGUCGg -3'
miRNA:   3'- -CugCCGAGGCU--------ACUGCuGUu---CCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 52735 0.66 0.868855
Target:  5'- cGAgGGCggCGGUGGCGAUguaAAGGGUg- -3'
miRNA:   3'- -CUgCCGagGCUACUGCUG---UUCCCGgu -5'
19741 5' -57.5 NC_004687.1 + 127741 0.66 0.868855
Target:  5'- uGACGGCgaggCCGA---CGGCAA-GGCCGg -3'
miRNA:   3'- -CUGCCGa---GGCUacuGCUGUUcCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 105057 0.66 0.866646
Target:  5'- gGACGGCUgCGGUucaacaagcugcccGACGAgcAGGGCa- -3'
miRNA:   3'- -CUGCCGAgGCUA--------------CUGCUguUCCCGgu -5'
19741 5' -57.5 NC_004687.1 + 14299 0.66 0.861418
Target:  5'- cGACGGg-CC-AUGAUGGCAgAGGGCUg -3'
miRNA:   3'- -CUGCCgaGGcUACUGCUGU-UCCCGGu -5'
19741 5' -57.5 NC_004687.1 + 107958 0.66 0.861418
Target:  5'- -cCGGCUUCGGU--CGGCu-GGGCCGg -3'
miRNA:   3'- cuGCCGAGGCUAcuGCUGuuCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 48865 0.66 0.861418
Target:  5'- cGACGGCgaccCCGGaccgcacagcgUGAUGAaccAGGGCCc -3'
miRNA:   3'- -CUGCCGa---GGCU-----------ACUGCUgu-UCCCGGu -5'
19741 5' -57.5 NC_004687.1 + 47256 0.66 0.860664
Target:  5'- cGugGGgcaaaucCUCCGGacGACGACGAGGuCCAg -3'
miRNA:   3'- -CugCC-------GAGGCUa-CUGCUGUUCCcGGU- -5'
19741 5' -57.5 NC_004687.1 + 141936 0.66 0.860664
Target:  5'- gGugGGUucccaaaUCCGGUGGcCGACGGGGcGaCCGu -3'
miRNA:   3'- -CugCCG-------AGGCUACU-GCUGUUCC-C-GGU- -5'
19741 5' -57.5 NC_004687.1 + 36052 0.66 0.853779
Target:  5'- gGGCGGCgagCUGGuucuUGACGAUcuGGGCg- -3'
miRNA:   3'- -CUGCCGa--GGCU----ACUGCUGuuCCCGgu -5'
19741 5' -57.5 NC_004687.1 + 40986 0.66 0.853779
Target:  5'- cGACGGCaggugcuggcgCCGAUGACaGCGAGcGCUAu -3'
miRNA:   3'- -CUGCCGa----------GGCUACUGcUGUUCcCGGU- -5'
19741 5' -57.5 NC_004687.1 + 7658 0.66 0.853779
Target:  5'- cGACGcGCUUCG-UGcgcagcGCGGCAAguGGGCCGa -3'
miRNA:   3'- -CUGC-CGAGGCuAC------UGCUGUU--CCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 73774 0.66 0.853779
Target:  5'- cGGCGGCUacUCGAcGGCGGCAccGGCa- -3'
miRNA:   3'- -CUGCCGA--GGCUaCUGCUGUucCCGgu -5'
19741 5' -57.5 NC_004687.1 + 68400 0.66 0.845944
Target:  5'- --gGGCUUCGAccccuucgucaUGugGuggguCGAGGGCCGc -3'
miRNA:   3'- cugCCGAGGCU-----------ACugCu----GUUCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 140600 0.66 0.837918
Target:  5'- -gUGGuCUCCGGUGGCGguguGCAGGuGGUCu -3'
miRNA:   3'- cuGCC-GAGGCUACUGC----UGUUC-CCGGu -5'
19741 5' -57.5 NC_004687.1 + 151414 0.66 0.837918
Target:  5'- --aGGUgacugCCGAgagGAugcgUGACGAGGGCCGg -3'
miRNA:   3'- cugCCGa----GGCUa--CU----GCUGUUCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 155582 0.66 0.837918
Target:  5'- aGGCGcGuCUcgugcacccacCCGAUcaggccGAUGACGAGGGCCAa -3'
miRNA:   3'- -CUGC-C-GA-----------GGCUA------CUGCUGUUCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 100396 0.66 0.82971
Target:  5'- -uUGGUcgaccuUgCGGUGACGACcAGGGCUAg -3'
miRNA:   3'- cuGCCG------AgGCUACUGCUGuUCCCGGU- -5'
19741 5' -57.5 NC_004687.1 + 120079 0.66 0.82971
Target:  5'- --aGGCUaUCGgcGACGACGAGGcGCUg -3'
miRNA:   3'- cugCCGA-GGCuaCUGCUGUUCC-CGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.