miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19743 5' -62.3 NC_004687.1 + 66230 0.66 0.633582
Target:  5'- gACCCGgaacCAGgccgcGCCGUCG-GGCACCguCg -3'
miRNA:   3'- -UGGGU----GUCa----CGGCGGCaCCGUGGguG- -5'
19743 5' -62.3 NC_004687.1 + 34572 0.66 0.633582
Target:  5'- gGCCCGCcugcgGGUGCUGCCGagaagGGCGgcgagaucuCCgACg -3'
miRNA:   3'- -UGGGUG-----UCACGGCGGCa----CCGU---------GGgUG- -5'
19743 5' -62.3 NC_004687.1 + 45696 0.66 0.633582
Target:  5'- gGCCCGCAGgaGCCGCUGaaguuCACCC-Cg -3'
miRNA:   3'- -UGGGUGUCa-CGGCGGCacc--GUGGGuG- -5'
19743 5' -62.3 NC_004687.1 + 6989 0.66 0.633582
Target:  5'- cGCCCGC-GUGuCCGgcCCGgcGGCGCCC-Cg -3'
miRNA:   3'- -UGGGUGuCAC-GGC--GGCa-CCGUGGGuG- -5'
19743 5' -62.3 NC_004687.1 + 138161 0.66 0.633582
Target:  5'- aGCCCACcuUGCCGCaGUGgaaGCACCuCAg -3'
miRNA:   3'- -UGGGUGucACGGCGgCAC---CGUGG-GUg -5'
19743 5' -62.3 NC_004687.1 + 13446 0.66 0.627648
Target:  5'- gGCCCGCAGcgcGuCCugagcagcgacguagGCCGgggugaccagggUGGCGCCCACc -3'
miRNA:   3'- -UGGGUGUCa--C-GG---------------CGGC------------ACCGUGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 132179 0.66 0.623693
Target:  5'- cACCacgugAUAGU-CCGUCGUGGCAaCCGCg -3'
miRNA:   3'- -UGGg----UGUCAcGGCGGCACCGUgGGUG- -5'
19743 5' -62.3 NC_004687.1 + 34868 0.66 0.623693
Target:  5'- cAUCCugGGccUGCCuCCG-GGCACCCu- -3'
miRNA:   3'- -UGGGugUC--ACGGcGGCaCCGUGGGug -5'
19743 5' -62.3 NC_004687.1 + 31103 0.66 0.623693
Target:  5'- cGCCCACcugauGaUGCCGaCCGaccUGGUGCaCCACu -3'
miRNA:   3'- -UGGGUGu----C-ACGGC-GGC---ACCGUG-GGUG- -5'
19743 5' -62.3 NC_004687.1 + 134967 0.66 0.623693
Target:  5'- aGCUCGuCGGggGUCaGCUG-GGCGCCCACu -3'
miRNA:   3'- -UGGGU-GUCa-CGG-CGGCaCCGUGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 45989 0.66 0.623693
Target:  5'- uGCCCAgcCGGUGCUgaGUCG-GGCAgUCGCa -3'
miRNA:   3'- -UGGGU--GUCACGG--CGGCaCCGUgGGUG- -5'
19743 5' -62.3 NC_004687.1 + 88639 0.66 0.620727
Target:  5'- gGCCU-CGGUgGCCgaggcgaucgacgcGCUGUggGGCACCCACa -3'
miRNA:   3'- -UGGGuGUCA-CGG--------------CGGCA--CCGUGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 152654 0.66 0.620727
Target:  5'- -aCUACAccGCCGCCGUGgccgugcacgccaaGCugCCGCa -3'
miRNA:   3'- ugGGUGUcaCGGCGGCAC--------------CGugGGUG- -5'
19743 5' -62.3 NC_004687.1 + 13742 0.66 0.61381
Target:  5'- gGCCCGguGcGCaCGCUcaGGCuGCCCACg -3'
miRNA:   3'- -UGGGUguCaCG-GCGGcaCCG-UGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 136851 0.66 0.61381
Target:  5'- cACCCaguccguggGCAGgaaGCCGCCGUGGguUagCCAg -3'
miRNA:   3'- -UGGG---------UGUCa--CGGCGGCACCguG--GGUg -5'
19743 5' -62.3 NC_004687.1 + 135539 0.66 0.61381
Target:  5'- uGCCa--GGUGCCGCCGUgGGCGgCgGg -3'
miRNA:   3'- -UGGgugUCACGGCGGCA-CCGUgGgUg -5'
19743 5' -62.3 NC_004687.1 + 22940 0.66 0.61381
Target:  5'- cCCCGCAGacucuaGCCGCUucGGCACCgaGCa -3'
miRNA:   3'- uGGGUGUCa-----CGGCGGcaCCGUGGg-UG- -5'
19743 5' -62.3 NC_004687.1 + 110905 0.66 0.612822
Target:  5'- cGCCCGgcGUGCCGauguugaUCGUGuCGCCCGCg -3'
miRNA:   3'- -UGGGUguCACGGC-------GGCACcGUGGGUG- -5'
19743 5' -62.3 NC_004687.1 + 24486 0.66 0.594089
Target:  5'- cGCCCGCAG-GuuGUCGUccagacGGCGCCgAg -3'
miRNA:   3'- -UGGGUGUCaCggCGGCA------CCGUGGgUg -5'
19743 5' -62.3 NC_004687.1 + 107772 0.66 0.594089
Target:  5'- aGCCUGCgGGUGCCuacGCCGagGGCGgUCGCg -3'
miRNA:   3'- -UGGGUG-UCACGG---CGGCa-CCGUgGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.