miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19744 3' -60.5 NC_004687.1 + 150777 0.76 0.221924
Target:  5'- uGGUUGGCCAUGUCcuggGCguaGGCCUCa -3'
miRNA:   3'- uCCAGCCGGUGCAGua--CGac-CCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 148505 0.67 0.643482
Target:  5'- gAGGaCGGCCA-GUCGcUGCUGGaGCUg- -3'
miRNA:   3'- -UCCaGCCGGUgCAGU-ACGACC-CGGag -5'
19744 3' -60.5 NC_004687.1 + 142653 1.09 0.00098
Target:  5'- cAGGUCGGCCACGUCAUGCUGGGCCUCg -3'
miRNA:   3'- -UCCAGCCGGUGCAGUACGACCCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 142459 0.7 0.46772
Target:  5'- uGGUcacccCGGCCuACGUCGcUGCUcaggacgcgcugcGGGCCUCc -3'
miRNA:   3'- uCCA-----GCCGG-UGCAGU-ACGA-------------CCCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 137413 0.66 0.693187
Target:  5'- gAGGUCGGCaGCGgccaGCaGGGCCa- -3'
miRNA:   3'- -UCCAGCCGgUGCaguaCGaCCCGGag -5'
19744 3' -60.5 NC_004687.1 + 132117 0.66 0.673393
Target:  5'- uGGUCGGgacgaCCACGUCGaGCUucuGGGCUc- -3'
miRNA:   3'- uCCAGCC-----GGUGCAGUaCGA---CCCGGag -5'
19744 3' -60.5 NC_004687.1 + 129218 0.68 0.603513
Target:  5'- -aGUCGGCCuugucgGCGUCGUaGCcgccgGuGGCCUCg -3'
miRNA:   3'- ucCAGCCGG------UGCAGUA-CGa----C-CCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 124817 0.68 0.567803
Target:  5'- cAGGUCGGUCggcaucaucagguggGCGuugccggaggugUCcgGCUGGGCCg- -3'
miRNA:   3'- -UCCAGCCGG---------------UGC------------AGuaCGACCCGGag -5'
19744 3' -60.5 NC_004687.1 + 122469 0.66 0.722491
Target:  5'- cGGcUCGGCUccuguucgGCGUCA-GCUGccGCCUCg -3'
miRNA:   3'- uCC-AGCCGG--------UGCAGUaCGACc-CGGAG- -5'
19744 3' -60.5 NC_004687.1 + 111185 0.67 0.639483
Target:  5'- cGGGUUGGUCGCGcugccugccgcacCAUGC-GGGCCg- -3'
miRNA:   3'- -UCCAGCCGGUGCa------------GUACGaCCCGGag -5'
19744 3' -60.5 NC_004687.1 + 110951 0.79 0.128892
Target:  5'- gGGGUCGGCgAUGUUGuucUGCUGGGCCa- -3'
miRNA:   3'- -UCCAGCCGgUGCAGU---ACGACCCGGag -5'
19744 3' -60.5 NC_004687.1 + 108046 0.66 0.693187
Target:  5'- cGGUCGGgCAUGUCGcUGaUGGaGCCgUCg -3'
miRNA:   3'- uCCAGCCgGUGCAGU-ACgACC-CGG-AG- -5'
19744 3' -60.5 NC_004687.1 + 106441 0.66 0.712785
Target:  5'- -cGUCGGCCAUGa---GCUGggcacGGCCUCg -3'
miRNA:   3'- ucCAGCCGGUGCaguaCGAC-----CCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 105125 0.7 0.47781
Target:  5'- -aGUCGGCuucCACGUCGaaUGCUGGuGCCa- -3'
miRNA:   3'- ucCAGCCG---GUGCAGU--ACGACC-CGGag -5'
19744 3' -60.5 NC_004687.1 + 102519 0.71 0.424174
Target:  5'- cGGGcgaUGGCCGCGauggccagcUCcUGCUGGGCCUg -3'
miRNA:   3'- -UCCa--GCCGGUGC---------AGuACGACCCGGAg -5'
19744 3' -60.5 NC_004687.1 + 102187 0.73 0.307283
Target:  5'- cGGGacgaUCGGCCACGcUCAgccGgaGGGCCUUg -3'
miRNA:   3'- -UCC----AGCCGGUGC-AGUa--CgaCCCGGAG- -5'
19744 3' -60.5 NC_004687.1 + 100475 0.66 0.693187
Target:  5'- uGGUCcgcugGGCCACGUCcuugGUGgagucaUGGGCCg- -3'
miRNA:   3'- uCCAG-----CCGGUGCAG----UACg-----ACCCGGag -5'
19744 3' -60.5 NC_004687.1 + 97123 0.66 0.722491
Target:  5'- uGGGUCGGCgG-GUCGUacgGC-GGGCCg- -3'
miRNA:   3'- -UCCAGCCGgUgCAGUA---CGaCCCGGag -5'
19744 3' -60.5 NC_004687.1 + 93471 0.68 0.597535
Target:  5'- cGGagGGCCAgcCGUgAgccccggauggguccUGCUGGGCCUg -3'
miRNA:   3'- uCCagCCGGU--GCAgU---------------ACGACCCGGAg -5'
19744 3' -60.5 NC_004687.1 + 92059 0.67 0.653471
Target:  5'- cGGUaGGCCGCGcCGcGCUGcaguGCCUCa -3'
miRNA:   3'- uCCAgCCGGUGCaGUaCGACc---CGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.