miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19745 5' -56.8 NC_004687.1 + 81703 0.66 0.88635
Target:  5'- -cGAGGCCCUgGgCGAccgcuGGACCcUGACc -3'
miRNA:   3'- aaCUUCGGGAgCaGCU-----CCUGGaGCUG- -5'
19745 5' -56.8 NC_004687.1 + 67267 0.66 0.88635
Target:  5'- gUGGGuGCCCcacagcgCGUCGAucGCCUCGGCc -3'
miRNA:   3'- aACUU-CGGGa------GCAGCUccUGGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 124580 0.66 0.88635
Target:  5'- -gGguGCCCUCGUUGGccuGGGCUUUGGg -3'
miRNA:   3'- aaCuuCGGGAGCAGCU---CCUGGAGCUg -5'
19745 5' -56.8 NC_004687.1 + 135437 0.66 0.88635
Target:  5'- gUGAccucaCCCUCGgcauugCGGugacGGACCUCGACc -3'
miRNA:   3'- aACUuc---GGGAGCa-----GCU----CCUGGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 107097 0.66 0.88635
Target:  5'- ---uGGCCUaCGcCGAGGACCUCcuGGCc -3'
miRNA:   3'- aacuUCGGGaGCaGCUCCUGGAG--CUG- -5'
19745 5' -56.8 NC_004687.1 + 13813 0.66 0.88497
Target:  5'- -cGAAGCCCgagacugaGAGGACCgCGAUc -3'
miRNA:   3'- aaCUUCGGGagcag---CUCCUGGaGCUG- -5'
19745 5' -56.8 NC_004687.1 + 2221 0.66 0.879363
Target:  5'- aUGGAuGCCCgCG-CGAuGGuCCUCGGCc -3'
miRNA:   3'- aACUU-CGGGaGCaGCU-CCuGGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 89639 0.66 0.879363
Target:  5'- -gGGAGaaccaCCUCGaaGAGGAcuggaucgaCCUCGACg -3'
miRNA:   3'- aaCUUCg----GGAGCagCUCCU---------GGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 153689 0.66 0.879363
Target:  5'- -aGAAGCCUacaUCGUCaccGACCUCGGg -3'
miRNA:   3'- aaCUUCGGG---AGCAGcucCUGGAGCUg -5'
19745 5' -56.8 NC_004687.1 + 75893 0.66 0.879363
Target:  5'- aUGGuGGCCCcggCGUUGcGGGAguaccCCUCGACg -3'
miRNA:   3'- aACU-UCGGGa--GCAGC-UCCU-----GGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 149901 0.66 0.879363
Target:  5'- ---cAGCgCCUUGUCGAugcgcagcGcGGCCUCGGCa -3'
miRNA:   3'- aacuUCG-GGAGCAGCU--------C-CUGGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 152649 0.66 0.879363
Target:  5'- -cGcGGCCCugaUCGUCGcGGugCUUGAUc -3'
miRNA:   3'- aaCuUCGGG---AGCAGCuCCugGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 16013 0.66 0.872886
Target:  5'- -aGGAGCCCUUGUCGucgguggcagugauGACCgCGAUg -3'
miRNA:   3'- aaCUUCGGGAGCAGCuc------------CUGGaGCUG- -5'
19745 5' -56.8 NC_004687.1 + 62300 0.66 0.872155
Target:  5'- -cGGAGCCUUCcguUUGGccGGACgCUCGACa -3'
miRNA:   3'- aaCUUCGGGAGc--AGCU--CCUG-GAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 127663 0.66 0.871423
Target:  5'- -gGAAGCCUcgccugaUCGUgGuGGGCCgcacCGACa -3'
miRNA:   3'- aaCUUCGGG-------AGCAgCuCCUGGa---GCUG- -5'
19745 5' -56.8 NC_004687.1 + 81355 0.66 0.869212
Target:  5'- cUGggGCCaccgugacaggGUCGuGGGCCuUCGACg -3'
miRNA:   3'- aACuuCGGgag--------CAGCuCCUGG-AGCUG- -5'
19745 5' -56.8 NC_004687.1 + 35991 0.66 0.864733
Target:  5'- -cGccGCCCUCGacgUCGAGgccaagggcGugCUCGACa -3'
miRNA:   3'- aaCuuCGGGAGC---AGCUC---------CugGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 102439 0.66 0.864733
Target:  5'- cUGGuAGCgCCUgaGUCGGGuGGCCUUGGCc -3'
miRNA:   3'- aACU-UCG-GGAg-CAGCUC-CUGGAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 69761 0.66 0.860179
Target:  5'- ----uGCCCaaCGUCGAGGACgacgaggucacgguuCUCGGCg -3'
miRNA:   3'- aacuuCGGGa-GCAGCUCCUG---------------GAGCUG- -5'
19745 5' -56.8 NC_004687.1 + 35958 0.66 0.856327
Target:  5'- aUGGccAGCCggacgauCUCGUCGAGGGugUCGAUa -3'
miRNA:   3'- aACU--UCGG-------GAGCAGCUCCUggAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.