miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19746 5' -57.5 NC_004687.1 + 83218 0.66 0.89116
Target:  5'- cGGcG-GCaUCGACGCCGa-GACCGAUg -3'
miRNA:   3'- -CCaCaCG-AGCUGUGGCggCUGGCUGu -5'
19746 5' -57.5 NC_004687.1 + 46019 0.66 0.89116
Target:  5'- aGGcgGU-CUUGGCGCCGCCGcGCgCGAUg -3'
miRNA:   3'- -CCa-CAcGAGCUGUGGCGGC-UG-GCUGu -5'
19746 5' -57.5 NC_004687.1 + 129171 0.66 0.89116
Target:  5'- cGGUGUGgccauguggggaUUCgGACACCGUCGAgCG-CAa -3'
miRNA:   3'- -CCACAC------------GAG-CUGUGGCGGCUgGCuGU- -5'
19746 5' -57.5 NC_004687.1 + 1816 0.66 0.890503
Target:  5'- gGGUGUcgauggcGCUCcACGCUGCCGaAUCGAa- -3'
miRNA:   3'- -CCACA-------CGAGcUGUGGCGGC-UGGCUgu -5'
19746 5' -57.5 NC_004687.1 + 49484 0.66 0.887187
Target:  5'- cGGUGgccgGuCUCGGgAUCGCCGACgcgcucgggcacgauCGGCGa -3'
miRNA:   3'- -CCACa---C-GAGCUgUGGCGGCUG---------------GCUGU- -5'
19746 5' -57.5 NC_004687.1 + 139715 0.66 0.884495
Target:  5'- --gGUGC-CGACAUCGCC-ACCaGCAa -3'
miRNA:   3'- ccaCACGaGCUGUGGCGGcUGGcUGU- -5'
19746 5' -57.5 NC_004687.1 + 23167 0.66 0.884495
Target:  5'- uGGUGaccaucacCGACAgCGCCGACgGACGc -3'
miRNA:   3'- -CCACacga----GCUGUgGCGGCUGgCUGU- -5'
19746 5' -57.5 NC_004687.1 + 81797 0.66 0.884495
Target:  5'- uGGgGUGCcgacggCGGCACCGCCuucaccuacuacGGCuCGGCGg -3'
miRNA:   3'- -CCaCACGa-----GCUGUGGCGG------------CUG-GCUGU- -5'
19746 5' -57.5 NC_004687.1 + 69997 0.66 0.884495
Target:  5'- aGGUcuacGUGCUCGGCACCGacuaCG-UCGuCAc -3'
miRNA:   3'- -CCA----CACGAGCUGUGGCg---GCuGGCuGU- -5'
19746 5' -57.5 NC_004687.1 + 16876 0.66 0.884495
Target:  5'- gGGUG-GCguacgucuugaUCGACGagGCCGACCGcCAg -3'
miRNA:   3'- -CCACaCG-----------AGCUGUggCGGCUGGCuGU- -5'
19746 5' -57.5 NC_004687.1 + 110729 0.66 0.884495
Target:  5'- cGGUgGUGgUCuGCGCCGCCGcguugUCGGCGg -3'
miRNA:   3'- -CCA-CACgAGcUGUGGCGGCu----GGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 140780 0.66 0.884495
Target:  5'- uGGUGgGCU-GGCGC--CCGACCGGCGu -3'
miRNA:   3'- -CCACaCGAgCUGUGgcGGCUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 108361 0.66 0.877617
Target:  5'- -cUG-GCUcCGGCACCGCCGccACCcACAc -3'
miRNA:   3'- ccACaCGA-GCUGUGGCGGC--UGGcUGU- -5'
19746 5' -57.5 NC_004687.1 + 117062 0.66 0.877617
Target:  5'- gGGUGgcGC-CGACAuCCGCgCGACCcaguucGACAu -3'
miRNA:   3'- -CCACa-CGaGCUGU-GGCG-GCUGG------CUGU- -5'
19746 5' -57.5 NC_004687.1 + 64544 0.66 0.877617
Target:  5'- uGGUGgaaggGCUCGACcggcGCCaucauGCUGACCuACAc -3'
miRNA:   3'- -CCACa----CGAGCUG----UGG-----CGGCUGGcUGU- -5'
19746 5' -57.5 NC_004687.1 + 42014 0.66 0.877617
Target:  5'- --gGUGCcCGGCGgagaGCCGAUCGACGa -3'
miRNA:   3'- ccaCACGaGCUGUgg--CGGCUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 108228 0.66 0.877617
Target:  5'- uGGUGgaccgGUUCGGCgACUauCUGGCCGACAc -3'
miRNA:   3'- -CCACa----CGAGCUG-UGGc-GGCUGGCUGU- -5'
19746 5' -57.5 NC_004687.1 + 72258 0.66 0.877617
Target:  5'- uGGUGUacgGgUCGGCGCCGuuGACgaACAg -3'
miRNA:   3'- -CCACA---CgAGCUGUGGCggCUGgcUGU- -5'
19746 5' -57.5 NC_004687.1 + 67608 0.66 0.877617
Target:  5'- aGGaGUcgUCGACACCGCCGgaGCCGuGCu -3'
miRNA:   3'- -CCaCAcgAGCUGUGGCGGC--UGGC-UGu -5'
19746 5' -57.5 NC_004687.1 + 103782 0.66 0.876917
Target:  5'- uGUGUGCcuuucacagucccUCGGC-CCGCCG-CCG-CAc -3'
miRNA:   3'- cCACACG-------------AGCUGuGGCGGCuGGCuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.