miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19747 3' -57.6 NC_004687.1 + 90999 0.65 0.842714
Target:  5'- cGCCaUGGAucAAGGaCCGcuuguaguccucguCCGGGUCGUa -3'
miRNA:   3'- -UGG-ACCUuuUUCC-GGU--------------GGCCCGGCAa -5'
19747 3' -57.6 NC_004687.1 + 90222 0.66 0.83699
Target:  5'- -gCUGGAAGAAGGCCucGCC--GCCGa- -3'
miRNA:   3'- ugGACCUUUUUCCGG--UGGccCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 19935 0.66 0.83699
Target:  5'- cGCCUGGAGGccaagaccGAcGGCCACUGGucaCCGa- -3'
miRNA:   3'- -UGGACCUUU--------UU-CCGGUGGCCc--GGCaa -5'
19747 3' -57.6 NC_004687.1 + 111788 0.66 0.83699
Target:  5'- uCCaGGA---AGGCCACCaGGGuCCGg- -3'
miRNA:   3'- uGGaCCUuuuUCCGGUGG-CCC-GGCaa -5'
19747 3' -57.6 NC_004687.1 + 2043 0.66 0.836165
Target:  5'- uACCgacuGAGGAAGGUCACCGccccgugcaggaaGGCCGa- -3'
miRNA:   3'- -UGGac--CUUUUUCCGGUGGC-------------CCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 105243 0.66 0.828655
Target:  5'- aGCgUGGAAcAGGGCCGaCaGGCCGa- -3'
miRNA:   3'- -UGgACCUUuUUCCGGUgGcCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 9801 0.66 0.828655
Target:  5'- gACCcaugGGAAAuGGcGCCGCCGGGUa--- -3'
miRNA:   3'- -UGGa---CCUUUuUC-CGGUGGCCCGgcaa -5'
19747 3' -57.6 NC_004687.1 + 91679 0.66 0.826118
Target:  5'- gGCCgaGGAAGAggacuuccaucgccAGGCCuACCuGGCCGa- -3'
miRNA:   3'- -UGGa-CCUUUU--------------UCCGG-UGGcCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 119191 0.66 0.820139
Target:  5'- cACCggcGGucuugcccGGGGCCugCGGGCCa-- -3'
miRNA:   3'- -UGGa--CCuuu-----UUCCGGugGCCCGGcaa -5'
19747 3' -57.6 NC_004687.1 + 35637 0.66 0.820139
Target:  5'- cGCCgGGGucguGGGCCuuggaGCCGGaGCCGa- -3'
miRNA:   3'- -UGGaCCUuuu-UCCGG-----UGGCC-CGGCaa -5'
19747 3' -57.6 NC_004687.1 + 18086 0.66 0.820139
Target:  5'- aACCUcGuc-GAGGcCCGCCGGGCCc-- -3'
miRNA:   3'- -UGGAcCuuuUUCC-GGUGGCCCGGcaa -5'
19747 3' -57.6 NC_004687.1 + 146610 0.66 0.820139
Target:  5'- uCCUGGAGAucgccGAGG-CGCCGGuGCCc-- -3'
miRNA:   3'- uGGACCUUU-----UUCCgGUGGCC-CGGcaa -5'
19747 3' -57.6 NC_004687.1 + 55070 0.66 0.820139
Target:  5'- uACCUGcuGGAGAAGGCCA-CGGuGCCc-- -3'
miRNA:   3'- -UGGAC--CUUUUUCCGGUgGCC-CGGcaa -5'
19747 3' -57.6 NC_004687.1 + 139454 0.66 0.820139
Target:  5'- gUCUGGggGAcGGUCACCcGGGCg--- -3'
miRNA:   3'- uGGACCuuUUuCCGGUGG-CCCGgcaa -5'
19747 3' -57.6 NC_004687.1 + 112428 0.66 0.820139
Target:  5'- gACCggugcGGcuGAuguAGGCgACCGGGUCGUg -3'
miRNA:   3'- -UGGa----CCuuUU---UCCGgUGGCCCGGCAa -5'
19747 3' -57.6 NC_004687.1 + 144586 0.66 0.820139
Target:  5'- gUCUGGGccu-GGCCAgccagcucuauCUGGGCCGUa -3'
miRNA:   3'- uGGACCUuuuuCCGGU-----------GGCCCGGCAa -5'
19747 3' -57.6 NC_004687.1 + 131478 0.66 0.819278
Target:  5'- aACCgGGcGAAGGGCUugaccucgaaggcGCCGuGGCCGa- -3'
miRNA:   3'- -UGGaCCuUUUUCCGG-------------UGGC-CCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 83312 0.66 0.818416
Target:  5'- gGCCUGGccuaccaGAAcaagaacgucuccAAGGCCGCgugcuuCGGGCCGa- -3'
miRNA:   3'- -UGGACC-------UUU-------------UUCCGGUG------GCCCGGCaa -5'
19747 3' -57.6 NC_004687.1 + 30535 0.66 0.811453
Target:  5'- aACCggucgcGGAAcuuGGCCACgcugcaCGGGCCGUc -3'
miRNA:   3'- -UGGa-----CCUUuuuCCGGUG------GCCCGGCAa -5'
19747 3' -57.6 NC_004687.1 + 75566 0.66 0.811453
Target:  5'- gGCCcGGAAGuaggucAGGCCcaGCCGGaauuuGCCGUUg -3'
miRNA:   3'- -UGGaCCUUUu-----UCCGG--UGGCC-----CGGCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.