miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19747 5' -53.6 NC_004687.1 + 20003 0.66 0.9729
Target:  5'- --uACUGGGACgaAGAGGACUCCa-- -3'
miRNA:   3'- acuUGGCCUUGggUCUUCUGAGGcag -5'
19747 5' -53.6 NC_004687.1 + 90770 0.66 0.9729
Target:  5'- cGGGCUGGccauagaagcCCCGGAAGACgUUGUCa -3'
miRNA:   3'- aCUUGGCCuu--------GGGUCUUCUGaGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 70307 0.66 0.9729
Target:  5'- cUGcGCgGuGGACCCcGAGGGCgacaCCGUCa -3'
miRNA:   3'- -ACuUGgC-CUUGGGuCUUCUGa---GGCAG- -5'
19747 5' -53.6 NC_004687.1 + 58784 0.66 0.9729
Target:  5'- cGAACCGGAugCCuucgGGAuacGACgCCGa- -3'
miRNA:   3'- aCUUGGCCUugGG----UCUu--CUGaGGCag -5'
19747 5' -53.6 NC_004687.1 + 33917 0.66 0.9729
Target:  5'- --cGCCGGAcuccucgauAUCCGGAGGugUUCGcUCu -3'
miRNA:   3'- acuUGGCCU---------UGGGUCUUCugAGGC-AG- -5'
19747 5' -53.6 NC_004687.1 + 88043 0.66 0.9729
Target:  5'- cGcACCGGcGCCgAGguGGC-CCGUCu -3'
miRNA:   3'- aCuUGGCCuUGGgUCuuCUGaGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 77177 0.66 0.9729
Target:  5'- cGGACCGGuggcacCCCAGAcauaGGGCcugCCGaUCu -3'
miRNA:   3'- aCUUGGCCuu----GGGUCU----UCUGa--GGC-AG- -5'
19747 5' -53.6 NC_004687.1 + 15879 0.66 0.972064
Target:  5'- aGGACCGGGcaccgacgucggcuGCCgAGAGGACcacggugCCGgUCu -3'
miRNA:   3'- aCUUGGCCU--------------UGGgUCUUCUGa------GGC-AG- -5'
19747 5' -53.6 NC_004687.1 + 21365 0.66 0.970042
Target:  5'- -uGAUCGGccaGGCUCAGAaaGGGCUCCGg- -3'
miRNA:   3'- acUUGGCC---UUGGGUCU--UCUGAGGCag -5'
19747 5' -53.6 NC_004687.1 + 21463 0.66 0.970042
Target:  5'- aUGAGCgGGcugacaccGACCCAGGAG-CU-CGUCc -3'
miRNA:   3'- -ACUUGgCC--------UUGGGUCUUCuGAgGCAG- -5'
19747 5' -53.6 NC_004687.1 + 105743 0.66 0.970042
Target:  5'- cGAGCCGGAG-CCGGAGuACgucgCCGg- -3'
miRNA:   3'- aCUUGGCCUUgGGUCUUcUGa---GGCag -5'
19747 5' -53.6 NC_004687.1 + 99610 0.66 0.970042
Target:  5'- cGGGuCCGGAcggucuggaugcACCCAGAAGuCgccaaCGUCa -3'
miRNA:   3'- aCUU-GGCCU------------UGGGUCUUCuGag---GCAG- -5'
19747 5' -53.6 NC_004687.1 + 76466 0.66 0.970042
Target:  5'- cGGACUGGGACCUGGgcGGCaugcagUgGUCg -3'
miRNA:   3'- aCUUGGCCUUGGGUCuuCUGa-----GgCAG- -5'
19747 5' -53.6 NC_004687.1 + 80557 0.66 0.969145
Target:  5'- cGGACCGGAacggucACCCuGAccaagagcgacgucGGGCUCaacaaCGUCg -3'
miRNA:   3'- aCUUGGCCU------UGGGuCU--------------UCUGAG-----GCAG- -5'
19747 5' -53.6 NC_004687.1 + 112604 0.66 0.966975
Target:  5'- -cAGCCGGGACCgGGcuGGAUggCGUCg -3'
miRNA:   3'- acUUGGCCUUGGgUCu-UCUGagGCAG- -5'
19747 5' -53.6 NC_004687.1 + 79336 0.66 0.966975
Target:  5'- aGAGCgc--GCCCAauGGAGACUUCGUCg -3'
miRNA:   3'- aCUUGgccuUGGGU--CUUCUGAGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 86971 0.66 0.966975
Target:  5'- aGcACCGGcuCCCAGuuGG-UCCGUCc -3'
miRNA:   3'- aCuUGGCCuuGGGUCuuCUgAGGCAG- -5'
19747 5' -53.6 NC_004687.1 + 18094 0.66 0.966013
Target:  5'- cGAggcccGCCGGGcccugaccgaguucGCCCGGGcgcgcGGGCUgCGUCu -3'
miRNA:   3'- aCU-----UGGCCU--------------UGGGUCU-----UCUGAgGCAG- -5'
19747 5' -53.6 NC_004687.1 + 63947 0.66 0.963693
Target:  5'- gUGAAggCGGGGCCCgAGggGGCcCCGcCg -3'
miRNA:   3'- -ACUUg-GCCUUGGG-UCuuCUGaGGCaG- -5'
19747 5' -53.6 NC_004687.1 + 119070 0.66 0.963352
Target:  5'- gGAGCCGGuGCUggugcuggaggagCAGGuguGGACUCCGg- -3'
miRNA:   3'- aCUUGGCCuUGG-------------GUCU---UCUGAGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.