miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19749 5' -62.1 NC_004687.1 + 17847 0.66 0.691326
Target:  5'- -aGGGUCAGCGuGUGGuUGGuC-UGCGCg -3'
miRNA:   3'- gcCCCAGUCGC-CGUC-GCCuGcACGCG- -5'
19749 5' -62.1 NC_004687.1 + 96464 0.66 0.691326
Target:  5'- -cGGGUC-GCGGuCGGCaGGAcCGUccGCGCc -3'
miRNA:   3'- gcCCCAGuCGCC-GUCG-CCU-GCA--CGCG- -5'
19749 5' -62.1 NC_004687.1 + 142553 0.66 0.690364
Target:  5'- uGuGGGUgAGUGGUGGUGGuguacucaguauaACG-GCGCg -3'
miRNA:   3'- gC-CCCAgUCGCCGUCGCC-------------UGCaCGCG- -5'
19749 5' -62.1 NC_004687.1 + 98361 0.66 0.690364
Target:  5'- gCGcGGG-CAGCGcGU-GCGGagagaacaucugcGCGUGCGCc -3'
miRNA:   3'- -GC-CCCaGUCGC-CGuCGCC-------------UGCACGCG- -5'
19749 5' -62.1 NC_004687.1 + 68038 0.66 0.690364
Target:  5'- --cGGUgAGUGGCAGCGcggcaagaucacuGACG-GCGCc -3'
miRNA:   3'- gccCCAgUCGCCGUCGC-------------CUGCaCGCG- -5'
19749 5' -62.1 NC_004687.1 + 129974 0.66 0.687476
Target:  5'- uCGGGGcaguacucgaucgCGGCGGCA-CGGAUGccCGCg -3'
miRNA:   3'- -GCCCCa------------GUCGCCGUcGCCUGCacGCG- -5'
19749 5' -62.1 NC_004687.1 + 78916 0.66 0.681689
Target:  5'- cCGGGaUCuGCGGCccccAGaUGGACuuccaGUGCGCg -3'
miRNA:   3'- -GCCCcAGuCGCCG----UC-GCCUG-----CACGCG- -5'
19749 5' -62.1 NC_004687.1 + 127225 0.66 0.681689
Target:  5'- -cGGGUCAcCGGaacGCuGGGCGgUGCGCg -3'
miRNA:   3'- gcCCCAGUcGCCgu-CG-CCUGC-ACGCG- -5'
19749 5' -62.1 NC_004687.1 + 115242 0.66 0.681689
Target:  5'- uGGGGaUGGCgccggGGguGCGGugG-GUGCu -3'
miRNA:   3'- gCCCCaGUCG-----CCguCGCCugCaCGCG- -5'
19749 5' -62.1 NC_004687.1 + 73961 0.66 0.681689
Target:  5'- uCGGcauGGUCGGCGGC-GCGGugGccggaGUGa -3'
miRNA:   3'- -GCC---CCAGUCGCCGuCGCCugCa----CGCg -5'
19749 5' -62.1 NC_004687.1 + 6063 0.66 0.680723
Target:  5'- uGGGcGUCGGCGaCGGCGaucuggcgggcccGACGgGCGUa -3'
miRNA:   3'- gCCC-CAGUCGCcGUCGC-------------CUGCaCGCG- -5'
19749 5' -62.1 NC_004687.1 + 136160 0.66 0.672015
Target:  5'- cCGGGG-CGGUGGUGGC-GAUG-GCGg -3'
miRNA:   3'- -GCCCCaGUCGCCGUCGcCUGCaCGCg -5'
19749 5' -62.1 NC_004687.1 + 7821 0.66 0.672015
Target:  5'- aGGGGUCGGCGuGCGcGCGGuagaGCa- -3'
miRNA:   3'- gCCCCAGUCGC-CGU-CGCCugcaCGcg -5'
19749 5' -62.1 NC_004687.1 + 82155 0.66 0.662312
Target:  5'- uGGcGGU-GGCGGCGGCGGAUacaccccCGCa -3'
miRNA:   3'- gCC-CCAgUCGCCGUCGCCUGcac----GCG- -5'
19749 5' -62.1 NC_004687.1 + 81585 0.66 0.662312
Target:  5'- uCGGuGGUCguGGCGGCAcCGG-CG-GUGCc -3'
miRNA:   3'- -GCC-CCAG--UCGCCGUcGCCuGCaCGCG- -5'
19749 5' -62.1 NC_004687.1 + 139459 0.66 0.662312
Target:  5'- gCGGcaucGUCGGCGGCaaGGCcGACGcaucgGCGCu -3'
miRNA:   3'- -GCCc---CAGUCGCCG--UCGcCUGCa----CGCG- -5'
19749 5' -62.1 NC_004687.1 + 546 0.66 0.662312
Target:  5'- aGGucGG-CAGCGGCgggGGCGGG-GUGgGCa -3'
miRNA:   3'- gCC--CCaGUCGCCG---UCGCCUgCACgCG- -5'
19749 5' -62.1 NC_004687.1 + 135806 0.66 0.662312
Target:  5'- uGuGGGUCAGCGGaGGCuGGuugguguaccgaGCcUGCGCg -3'
miRNA:   3'- gC-CCCAGUCGCCgUCG-CC------------UGcACGCG- -5'
19749 5' -62.1 NC_004687.1 + 120141 0.66 0.662312
Target:  5'- gCGGGGUguucCAGCGGCccgcaguGCGucCGggGUGCg -3'
miRNA:   3'- -GCCCCA----GUCGCCGu------CGCcuGCa-CGCG- -5'
19749 5' -62.1 NC_004687.1 + 135566 0.66 0.656479
Target:  5'- uGGccgcaGUgCGGCGGCAGCgaGGACGagaagacucgcuaccUGCGCg -3'
miRNA:   3'- gCCc----CA-GUCGCCGUCG--CCUGC---------------ACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.