miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19751 3' -63.3 NC_004687.1 + 10929 0.66 0.622807
Target:  5'- cCGGGGUgcggaGCuGGCCCuGGuCuCGGCGGa -3'
miRNA:   3'- -GUCUCGa----CGuCCGGG-CCuGcGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 17412 0.66 0.622807
Target:  5'- gCAGAGCUGUcGGCCuuggCGGACaGCGa-GGa -3'
miRNA:   3'- -GUCUCGACGuCCGG----GCCUG-CGCcgCC- -5'
19751 3' -63.3 NC_004687.1 + 106218 0.66 0.622807
Target:  5'- aGGAGCUGgAGGUCCGG-CGUca-GGa -3'
miRNA:   3'- gUCUCGACgUCCGGGCCuGCGccgCC- -5'
19751 3' -63.3 NC_004687.1 + 92512 0.66 0.622807
Target:  5'- ---cGCUGCccGGGCUCuGAUGCGGCa- -3'
miRNA:   3'- gucuCGACG--UCCGGGcCUGCGCCGcc -5'
19751 3' -63.3 NC_004687.1 + 106570 0.66 0.613098
Target:  5'- -cGAGCUcggcguggaaugGCGGGCCCGGGaG-GGCuGGa -3'
miRNA:   3'- guCUCGA------------CGUCCGGGCCUgCgCCG-CC- -5'
19751 3' -63.3 NC_004687.1 + 102414 0.66 0.613098
Target:  5'- -uGAGCacCAGGCCCuGACGgGGCu- -3'
miRNA:   3'- guCUCGacGUCCGGGcCUGCgCCGcc -5'
19751 3' -63.3 NC_004687.1 + 138957 0.66 0.613098
Target:  5'- gAGGGCcGCgucgAGGaCCUGGAgcucgGCGGCGGc -3'
miRNA:   3'- gUCUCGaCG----UCC-GGGCCUg----CGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 81418 0.66 0.613098
Target:  5'- uCAGGGCcagcaUGCGGGCCUGGGCcucguacuucauGcCGGUGc -3'
miRNA:   3'- -GUCUCG-----ACGUCCGGGCCUG------------C-GCCGCc -5'
19751 3' -63.3 NC_004687.1 + 34795 0.66 0.607278
Target:  5'- uGGGGUgaUGgAcgaugaaguccacccGGcCCCGGACGUGGUGGg -3'
miRNA:   3'- gUCUCG--ACgU---------------CC-GGGCCUGCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 135554 0.66 0.603401
Target:  5'- -uGGGCgGCGGGCuuGGugaACGCauGCGGg -3'
miRNA:   3'- guCUCGaCGUCCGggCC---UGCGc-CGCC- -5'
19751 3' -63.3 NC_004687.1 + 6593 0.66 0.603401
Target:  5'- cCAGAccGCUGCGGGCCaCGua-GuCGGCGa -3'
miRNA:   3'- -GUCU--CGACGUCCGG-GCcugC-GCCGCc -5'
19751 3' -63.3 NC_004687.1 + 4951 0.66 0.593724
Target:  5'- cCGGuGGC-GCAGGggguUCCGGACGCagauccucGGCGGu -3'
miRNA:   3'- -GUC-UCGaCGUCC----GGGCCUGCG--------CCGCC- -5'
19751 3' -63.3 NC_004687.1 + 114940 0.66 0.58793
Target:  5'- uCGGAGgaGCGGGCCCGcaaccugcucGccgugccccgcgaggACGCGGCa- -3'
miRNA:   3'- -GUCUCgaCGUCCGGGC----------C---------------UGCGCCGcc -5'
19751 3' -63.3 NC_004687.1 + 113063 0.66 0.584073
Target:  5'- cCAGgccguGGCUGUagccGGGCUCgcuGGugGUGGUGGg -3'
miRNA:   3'- -GUC-----UCGACG----UCCGGG---CCugCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 110307 0.66 0.584073
Target:  5'- aGGAGUUGCguGGGaCCCGGcugGCGCuGGCc- -3'
miRNA:   3'- gUCUCGACG--UCC-GGGCC---UGCG-CCGcc -5'
19751 3' -63.3 NC_004687.1 + 11337 0.66 0.584073
Target:  5'- aUAGAGCUGgcuggcCAGGCCCaGACuGgGGUGc -3'
miRNA:   3'- -GUCUCGAC------GUCCGGGcCUG-CgCCGCc -5'
19751 3' -63.3 NC_004687.1 + 9026 0.66 0.584073
Target:  5'- gGGGGCaGCacGGGCuCCGGAgGUggaGGUGGg -3'
miRNA:   3'- gUCUCGaCG--UCCG-GGCCUgCG---CCGCC- -5'
19751 3' -63.3 NC_004687.1 + 42633 0.66 0.584073
Target:  5'- aCAGGGUUGCcaucGGCuuGGGCcucucucuugguGaCGGCGGu -3'
miRNA:   3'- -GUCUCGACGu---CCGggCCUG------------C-GCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 102100 0.66 0.574452
Target:  5'- cCAGggcaAGCUGCucgcucucGGCCUucuuGGccuCGCGGCGGg -3'
miRNA:   3'- -GUC----UCGACGu-------CCGGG----CCu--GCGCCGCC- -5'
19751 3' -63.3 NC_004687.1 + 147303 0.66 0.574452
Target:  5'- gAGGGUcgacccggUGC-GGCCUGGACuGCcaGGCGGu -3'
miRNA:   3'- gUCUCG--------ACGuCCGGGCCUG-CG--CCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.