miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20407 5' -63.5 NC_004688.1 + 72900 0.66 0.517002
Target:  5'- gCCGCCCCacaccccgaGgCGCACCgGCUcaUGCUc -3'
miRNA:   3'- aGGCGGGGcg-------CgGUGUGGgCGA--ACGG- -5'
20407 5' -63.5 NC_004688.1 + 59311 0.66 0.517002
Target:  5'- cCUGCCCgaCGCgaugGCCGcCGCCgGCUacgGCCg -3'
miRNA:   3'- aGGCGGG--GCG----CGGU-GUGGgCGAa--CGG- -5'
20407 5' -63.5 NC_004688.1 + 42406 0.66 0.517002
Target:  5'- cUCC-UCCCGCGCCcagaagacgGCGCa-GCUUGUCu -3'
miRNA:   3'- -AGGcGGGGCGCGG---------UGUGggCGAACGG- -5'
20407 5' -63.5 NC_004688.1 + 87983 0.66 0.517002
Target:  5'- cUCGCCCUcguccaauGCcCCACcCCCGCUaGCUa -3'
miRNA:   3'- aGGCGGGG--------CGcGGUGuGGGCGAaCGG- -5'
20407 5' -63.5 NC_004688.1 + 26581 0.66 0.517002
Target:  5'- uUCCGCCaagggCGgGCUugGCCUGagaaagGCCg -3'
miRNA:   3'- -AGGCGGg----GCgCGGugUGGGCgaa---CGG- -5'
20407 5' -63.5 NC_004688.1 + 35825 0.66 0.511328
Target:  5'- aCUGCUCCGCGCgcaagCGCGCCCccagaaucguugucaGCUUGg- -3'
miRNA:   3'- aGGCGGGGCGCG-----GUGUGGG---------------CGAACgg -5'
20407 5' -63.5 NC_004688.1 + 27004 0.66 0.507559
Target:  5'- cUCCGugaCCCCGgGCCACggcGCCaGUccGCCg -3'
miRNA:   3'- -AGGC---GGGGCgCGGUG---UGGgCGaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 23335 0.66 0.507559
Target:  5'- uUCCGUUcaUCGCGCCGgcgaUGCCCGUggucaGCCg -3'
miRNA:   3'- -AGGCGG--GGCGCGGU----GUGGGCGaa---CGG- -5'
20407 5' -63.5 NC_004688.1 + 80179 0.66 0.507559
Target:  5'- -gCGCugggCUCGCGCC-CACCCGUUcGCa -3'
miRNA:   3'- agGCG----GGGCGCGGuGUGGGCGAaCGg -5'
20407 5' -63.5 NC_004688.1 + 79781 0.66 0.507559
Target:  5'- gCCGCCauGCgGCgACGCCUGCUuaaugacccUGUCg -3'
miRNA:   3'- aGGCGGggCG-CGgUGUGGGCGA---------ACGG- -5'
20407 5' -63.5 NC_004688.1 + 81756 0.66 0.507559
Target:  5'- gCCGCgCCGgGCCuaucGCACCCGacccaagGCa -3'
miRNA:   3'- aGGCGgGGCgCGG----UGUGGGCgaa----CGg -5'
20407 5' -63.5 NC_004688.1 + 65765 0.66 0.507559
Target:  5'- gUCGCCCCGCuaCggGCGuCCCGUUccccgGCCc -3'
miRNA:   3'- aGGCGGGGCGcgG--UGU-GGGCGAa----CGG- -5'
20407 5' -63.5 NC_004688.1 + 25203 0.66 0.506619
Target:  5'- uUCUGCCCCGUaGCCuugucggGCACCaugauguccaGCgcGCCg -3'
miRNA:   3'- -AGGCGGGGCG-CGG-------UGUGGg---------CGaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 75838 0.66 0.49819
Target:  5'- uUCCGCCUCGaguuugucgGCCGCGgccucgucgcCCCGCUgaaugGCg -3'
miRNA:   3'- -AGGCGGGGCg--------CGGUGU----------GGGCGAa----CGg -5'
20407 5' -63.5 NC_004688.1 + 66283 0.66 0.4889
Target:  5'- aCCGCCgCGguacuUGCgAC-CCUGCUUGUCg -3'
miRNA:   3'- aGGCGGgGC-----GCGgUGuGGGCGAACGG- -5'
20407 5' -63.5 NC_004688.1 + 102947 0.66 0.4889
Target:  5'- gCCGCCauCCGCGCCGCcgaggAUCgGCUagaGCUa -3'
miRNA:   3'- aGGCGG--GGCGCGGUG-----UGGgCGAa--CGG- -5'
20407 5' -63.5 NC_004688.1 + 69316 0.66 0.487975
Target:  5'- cCCGCCUCggccgcaGCGCuCACACaggCCGUcgGCCc -3'
miRNA:   3'- aGGCGGGG-------CGCG-GUGUG---GGCGaaCGG- -5'
20407 5' -63.5 NC_004688.1 + 77684 0.66 0.487975
Target:  5'- cCCGCCCCaGCGCUugucgcaGCGCgCGCauccaaaUGUCa -3'
miRNA:   3'- aGGCGGGG-CGCGG-------UGUGgGCGa------ACGG- -5'
20407 5' -63.5 NC_004688.1 + 55251 0.66 0.479691
Target:  5'- -aUGCaCCGgGCCaggagggucugcGCACCCGCggcacgUGCCg -3'
miRNA:   3'- agGCGgGGCgCGG------------UGUGGGCGa-----ACGG- -5'
20407 5' -63.5 NC_004688.1 + 63322 0.66 0.479691
Target:  5'- -gCGCCCCgGCGCCACGCgUCGag-GUa -3'
miRNA:   3'- agGCGGGG-CGCGGUGUG-GGCgaaCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.