miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20575 5' -59.6 NC_004688.1 + 42691 0.66 0.676062
Target:  5'- gGGGAaucCGCCGGUGagGAUUCCGCGCUc -3'
miRNA:   3'- -CUCUa--GCGGUCGCggUUGGGGCGUGA- -5'
20575 5' -59.6 NC_004688.1 + 64128 0.66 0.665828
Target:  5'- -uGAUCGCCGGCGCgAugGCCaCCaacCGCUu -3'
miRNA:   3'- cuCUAGCGGUCGCGgU--UGG-GGc--GUGA- -5'
20575 5' -59.6 NC_004688.1 + 24134 0.66 0.665828
Target:  5'- -cGAucUCGUCAGuCGUCuGCCCCGgGCUu -3'
miRNA:   3'- cuCU--AGCGGUC-GCGGuUGGGGCgUGA- -5'
20575 5' -59.6 NC_004688.1 + 85196 0.66 0.665828
Target:  5'- -cGAUCGCCuGCGCU--UCCUGCggGCUa -3'
miRNA:   3'- cuCUAGCGGuCGCGGuuGGGGCG--UGA- -5'
20575 5' -59.6 NC_004688.1 + 104250 0.66 0.655566
Target:  5'- cGGGGUCcguGCCGGCGuaaCCGACCUC-CACg -3'
miRNA:   3'- -CUCUAG---CGGUCGC---GGUUGGGGcGUGa -5'
20575 5' -59.6 NC_004688.1 + 35249 0.66 0.655566
Target:  5'- --cGUCGgCAGCGCCGAacgacCCCUGCGa- -3'
miRNA:   3'- cucUAGCgGUCGCGGUU-----GGGGCGUga -5'
20575 5' -59.6 NC_004688.1 + 75350 0.66 0.654539
Target:  5'- cGAGAaguacacCGCCGGCGCCGccauaugugGCcgacggggcugagCCCGCGCg -3'
miRNA:   3'- -CUCUa------GCGGUCGCGGU---------UG-------------GGGCGUGa -5'
20575 5' -59.6 NC_004688.1 + 3676 0.66 0.645286
Target:  5'- -uGAUCGCCGccGCGCgCGACUUCGC-Ca -3'
miRNA:   3'- cuCUAGCGGU--CGCG-GUUGGGGCGuGa -5'
20575 5' -59.6 NC_004688.1 + 107130 0.66 0.645286
Target:  5'- -uGAUCGUUGugGCCuuCCCCGCGCUg -3'
miRNA:   3'- cuCUAGCGGUcgCGGuuGGGGCGUGA- -5'
20575 5' -59.6 NC_004688.1 + 25813 0.66 0.634994
Target:  5'- aGGAaCGCCGGCGCCuuAGCCUUuaGCa -3'
miRNA:   3'- cUCUaGCGGUCGCGG--UUGGGGcgUGa -5'
20575 5' -59.6 NC_004688.1 + 54141 0.66 0.634994
Target:  5'- -cGAUCGaCUcgagGGCGCCGACCgcgaaUCGCGCa -3'
miRNA:   3'- cuCUAGC-GG----UCGCGGUUGG-----GGCGUGa -5'
20575 5' -59.6 NC_004688.1 + 40642 0.66 0.634994
Target:  5'- --uGUCGCCAGCGCU--CCgCCGgGCg -3'
miRNA:   3'- cucUAGCGGUCGCGGuuGG-GGCgUGa -5'
20575 5' -59.6 NC_004688.1 + 34673 0.66 0.634994
Target:  5'- -cGAUUGCCGuCGUCGGuCCCCGcCACa -3'
miRNA:   3'- cuCUAGCGGUcGCGGUU-GGGGC-GUGa -5'
20575 5' -59.6 NC_004688.1 + 84645 0.66 0.624701
Target:  5'- cGAGGcCGCCaacAGCGCCuGCCgcagcaccugCCGCACc -3'
miRNA:   3'- -CUCUaGCGG---UCGCGGuUGG----------GGCGUGa -5'
20575 5' -59.6 NC_004688.1 + 81505 0.67 0.604139
Target:  5'- uGGAaaUgGCCGG-GCCGaucgccACCCCGCGCg -3'
miRNA:   3'- cUCU--AgCGGUCgCGGU------UGGGGCGUGa -5'
20575 5' -59.6 NC_004688.1 + 84493 0.67 0.593885
Target:  5'- cGGAcCgGCCAuCGCCGAgCCCGCGCc -3'
miRNA:   3'- cUCUaG-CGGUcGCGGUUgGGGCGUGa -5'
20575 5' -59.6 NC_004688.1 + 101388 0.67 0.58366
Target:  5'- gGAGAUcCGCCucGCGCuggaggaaguCAACCuuGCGCa -3'
miRNA:   3'- -CUCUA-GCGGu-CGCG----------GUUGGggCGUGa -5'
20575 5' -59.6 NC_004688.1 + 86869 0.67 0.58366
Target:  5'- cGGGAUacugacggcCGCCAGCGCCccggagAugCCCGCc-- -3'
miRNA:   3'- -CUCUA---------GCGGUCGCGG------UugGGGCGuga -5'
20575 5' -59.6 NC_004688.1 + 37843 0.67 0.58366
Target:  5'- -cGAUgGUgGGCGCCGcacauGCCCCGCu-- -3'
miRNA:   3'- cuCUAgCGgUCGCGGU-----UGGGGCGuga -5'
20575 5' -59.6 NC_004688.1 + 60828 0.67 0.573471
Target:  5'- cGGAUCGaCCAGCG-CAACCCCa---- -3'
miRNA:   3'- cUCUAGC-GGUCGCgGUUGGGGcguga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.