miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20742 5' -62 NC_004688.1 + 1124 0.66 0.594113
Target:  5'- aGUCCGGUCCGuagCGgauUGCCAcGCgCACCu -3'
miRNA:   3'- aCGGGCUAGGCca-GC---GCGGU-CG-GUGG- -5'
20742 5' -62 NC_004688.1 + 87913 0.66 0.593119
Target:  5'- gGCCCGcUCCagggaugcgacgcGGuuuucggccacgUCGCGCU-GCCGCCg -3'
miRNA:   3'- aCGGGCuAGG-------------CC------------AGCGCGGuCGGUGG- -5'
20742 5' -62 NC_004688.1 + 33663 0.66 0.584185
Target:  5'- gUGUuaCCG--CCGGcCGCGCC-GUCACCa -3'
miRNA:   3'- -ACG--GGCuaGGCCaGCGCGGuCGGUGG- -5'
20742 5' -62 NC_004688.1 + 108591 0.66 0.584185
Target:  5'- gGCCgacUGAUCCGGcgCGCGCaagGGUUACUc -3'
miRNA:   3'- aCGG---GCUAGGCCa-GCGCGg--UCGGUGG- -5'
20742 5' -62 NC_004688.1 + 23085 0.66 0.57429
Target:  5'- -aCCCGAgacgCCGa--GCGCCAGCgUGCCa -3'
miRNA:   3'- acGGGCUa---GGCcagCGCGGUCG-GUGG- -5'
20742 5' -62 NC_004688.1 + 5523 0.66 0.57429
Target:  5'- gUGacaCUGAUCUGGUgGC-CCGugacGCCGCCg -3'
miRNA:   3'- -ACg--GGCUAGGCCAgCGcGGU----CGGUGG- -5'
20742 5' -62 NC_004688.1 + 7891 0.66 0.573303
Target:  5'- cGCUCGGguucgCCGaGUCGCggaaccaccgcagGCCAuagcguucgGCCGCCa -3'
miRNA:   3'- aCGGGCUa----GGC-CAGCG-------------CGGU---------CGGUGG- -5'
20742 5' -62 NC_004688.1 + 11611 0.66 0.564434
Target:  5'- aGCCUGAUCuuCGGgggcgaGCGCCucaaacuGCgGCCa -3'
miRNA:   3'- aCGGGCUAG--GCCag----CGCGGu------CGgUGG- -5'
20742 5' -62 NC_004688.1 + 1454 0.66 0.564434
Target:  5'- gGCUCGGUCCauaaaGGUCauaGCUAGgCGCCu -3'
miRNA:   3'- aCGGGCUAGG-----CCAGcg-CGGUCgGUGG- -5'
20742 5' -62 NC_004688.1 + 110412 0.66 0.554623
Target:  5'- aUGUCUGAUCgcgccgaGGcUCGCGCCGucaaucGCCugCg -3'
miRNA:   3'- -ACGGGCUAGg------CC-AGCGCGGU------CGGugG- -5'
20742 5' -62 NC_004688.1 + 45099 0.66 0.554623
Target:  5'- uUGCuuGAgcucgUCGGUgGUGgCGGCCugCu -3'
miRNA:   3'- -ACGggCUa----GGCCAgCGCgGUCGGugG- -5'
20742 5' -62 NC_004688.1 + 90633 0.66 0.554623
Target:  5'- -uUCCGAUUCcaUCGCGCgGGCgGCCa -3'
miRNA:   3'- acGGGCUAGGccAGCGCGgUCGgUGG- -5'
20742 5' -62 NC_004688.1 + 49878 0.66 0.553645
Target:  5'- uUGCCCGGuUCCGugagguuGUUGgGCgC-GCCGCCg -3'
miRNA:   3'- -ACGGGCU-AGGC-------CAGCgCG-GuCGGUGG- -5'
20742 5' -62 NC_004688.1 + 48886 0.66 0.547786
Target:  5'- gUGCCgCGGggcUCCGGUggagcccauguuaaaCGUcgcggcuGCUAGCCGCCu -3'
miRNA:   3'- -ACGG-GCU---AGGCCA---------------GCG-------CGGUCGGUGG- -5'
20742 5' -62 NC_004688.1 + 105508 0.67 0.525517
Target:  5'- gGCCCGAUgaaCCGcaagCGCGCCAugaaguuuGCCGgCg -3'
miRNA:   3'- aCGGGCUA---GGCca--GCGCGGU--------CGGUgG- -5'
20742 5' -62 NC_004688.1 + 29619 0.67 0.525517
Target:  5'- aG-CCGAUCUuGUCcauGCGCCAGuUCACCg -3'
miRNA:   3'- aCgGGCUAGGcCAG---CGCGGUC-GGUGG- -5'
20742 5' -62 NC_004688.1 + 86361 0.67 0.525517
Target:  5'- cGCCCGAUUCuGcUCG-GCCAuGCC-CCg -3'
miRNA:   3'- aCGGGCUAGGcC-AGCgCGGU-CGGuGG- -5'
20742 5' -62 NC_004688.1 + 45204 0.67 0.525517
Target:  5'- uUGCCCGGcCCGcaacucuUUGaUGCCGGCCACg -3'
miRNA:   3'- -ACGGGCUaGGCc------AGC-GCGGUCGGUGg -5'
20742 5' -62 NC_004688.1 + 25744 0.67 0.506437
Target:  5'- cGCCCcg-CCGGggcCGCCuugggGGCCGCCg -3'
miRNA:   3'- aCGGGcuaGGCCagcGCGG-----UCGGUGG- -5'
20742 5' -62 NC_004688.1 + 26356 0.67 0.50077
Target:  5'- aGCCCGcgCCcauggcgcccuggauGG-CaGCGCCcgcaaGGCCACCg -3'
miRNA:   3'- aCGGGCuaGG---------------CCaG-CGCGG-----UCGGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.