miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21054 5' -52.9 NC_004745.1 + 3589 0.66 0.705511
Target:  5'- cCGGGUc---AUCggUgACgGCCAGCCc -3'
miRNA:   3'- -GCCCAuuauUGGuuGgUGgCGGUCGG- -5'
21054 5' -52.9 NC_004745.1 + 27578 0.66 0.705511
Target:  5'- --cGUGAUGugCGugCgcGCCGCCAGgCa -3'
miRNA:   3'- gccCAUUAUugGUugG--UGGCGGUCgG- -5'
21054 5' -52.9 NC_004745.1 + 7869 0.66 0.682603
Target:  5'- cCGGcUGAUAugUAcgGCCuGCCGUCAGCg -3'
miRNA:   3'- -GCCcAUUAUugGU--UGG-UGGCGGUCGg -5'
21054 5' -52.9 NC_004745.1 + 9902 0.67 0.647869
Target:  5'- gCGGGuUGAUGcuuucACCAuaACCACCGgCA-CCg -3'
miRNA:   3'- -GCCC-AUUAU-----UGGU--UGGUGGCgGUcGG- -5'
21054 5' -52.9 NC_004745.1 + 9605 0.67 0.646706
Target:  5'- uGGGUc--AGCCAcugaaGCCagucagugcacauGCCGCCGGUCu -3'
miRNA:   3'- gCCCAuuaUUGGU-----UGG-------------UGGCGGUCGG- -5'
21054 5' -52.9 NC_004745.1 + 8300 0.67 0.636242
Target:  5'- cCGGGcgcugGugCAACCGgCGCaCAGCa -3'
miRNA:   3'- -GCCCauua-UugGUUGGUgGCG-GUCGg -5'
21054 5' -52.9 NC_004745.1 + 16943 0.67 0.635079
Target:  5'- gGGGUuGUAaaACCAuuuccgagggaaaGCCuACCGCCAgaauuucaGCCa -3'
miRNA:   3'- gCCCAuUAU--UGGU-------------UGG-UGGCGGU--------CGG- -5'
21054 5' -52.9 NC_004745.1 + 79 0.67 0.624611
Target:  5'- ----aAAUAAaauCCGcACCACCGCCAGCg -3'
miRNA:   3'- gcccaUUAUU---GGU-UGGUGGCGGUCGg -5'
21054 5' -52.9 NC_004745.1 + 16706 0.67 0.624611
Target:  5'- -uGGUcagcGAUGGCCuguaacgaCGCCGCCAGCg -3'
miRNA:   3'- gcCCA----UUAUUGGuug-----GUGGCGGUCGg -5'
21054 5' -52.9 NC_004745.1 + 5498 0.67 0.624611
Target:  5'- aCGGGcAAUcuCCAGCgCACCGgCAauaucGCCg -3'
miRNA:   3'- -GCCCaUUAuuGGUUG-GUGGCgGU-----CGG- -5'
21054 5' -52.9 NC_004745.1 + 19074 0.67 0.612987
Target:  5'- gCGGGUAuUAauucccacagcgGCCAGuucCCGCUGCUGGCg -3'
miRNA:   3'- -GCCCAUuAU------------UGGUU---GGUGGCGGUCGg -5'
21054 5' -52.9 NC_004745.1 + 10579 0.67 0.601382
Target:  5'- aGGGUAcgGG-CGACCGCCuCCuGCUg -3'
miRNA:   3'- gCCCAUuaUUgGUUGGUGGcGGuCGG- -5'
21054 5' -52.9 NC_004745.1 + 7609 0.67 0.596748
Target:  5'- gCGGGUAAaucagggacaguGCCGGCauCAgCGCCAGCg -3'
miRNA:   3'- -GCCCAUUau----------UGGUUG--GUgGCGGUCGg -5'
21054 5' -52.9 NC_004745.1 + 9027 0.68 0.594433
Target:  5'- uCGGGUGAUGGCacagaaagccccggaCGGCaCACCcuacgcGCCAcGCCa -3'
miRNA:   3'- -GCCCAUUAUUG---------------GUUG-GUGG------CGGU-CGG- -5'
21054 5' -52.9 NC_004745.1 + 5496 0.68 0.589807
Target:  5'- cCGGGUAAacACCGccgcACC-CCGCCGuaCa -3'
miRNA:   3'- -GCCCAUUauUGGU----UGGuGGCGGUcgG- -5'
21054 5' -52.9 NC_004745.1 + 6835 0.68 0.589807
Target:  5'- gGGGUGAUGGgUucACCACCGgCAagcaccuuGCCg -3'
miRNA:   3'- gCCCAUUAUUgGu-UGGUGGCgGU--------CGG- -5'
21054 5' -52.9 NC_004745.1 + 4287 0.68 0.578271
Target:  5'- -cGGUGuc-ACCGgcuCCAUCGCCAGCa -3'
miRNA:   3'- gcCCAUuauUGGUu--GGUGGCGGUCGg -5'
21054 5' -52.9 NC_004745.1 + 3991 0.68 0.578271
Target:  5'- gGGGUgacgcccuGAUGACgAACUGCUGaCCGGCg -3'
miRNA:   3'- gCCCA--------UUAUUGgUUGGUGGC-GGUCGg -5'
21054 5' -52.9 NC_004745.1 + 1743 0.68 0.578271
Target:  5'- aCGGGUcGUAACCAAuCCAUa-CCGGgCg -3'
miRNA:   3'- -GCCCAuUAUUGGUU-GGUGgcGGUCgG- -5'
21054 5' -52.9 NC_004745.1 + 10637 0.68 0.566785
Target:  5'- aCGGGcGGUGauGCUGGCCugUGC-AGCCg -3'
miRNA:   3'- -GCCCaUUAU--UGGUUGGugGCGgUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.