miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21182 3' -59.9 NC_004778.3 + 69478 0.66 0.715498
Target:  5'- -gGCGC-GCUGGCCGUguuuaGCCUGGugUa -3'
miRNA:   3'- agCGCGaCGACCGGCG-----UGGGUUugGc -5'
21182 3' -59.9 NC_004778.3 + 96532 0.66 0.715498
Target:  5'- uUCGCGuCUGCgGGCgUGCACgC--GCCGu -3'
miRNA:   3'- -AGCGC-GACGaCCG-GCGUGgGuuUGGC- -5'
21182 3' -59.9 NC_004778.3 + 20915 0.66 0.715498
Target:  5'- uUUGCGCacauUGCgauaauGCCGCAgCCCA-GCCGg -3'
miRNA:   3'- -AGCGCG----ACGac----CGGCGU-GGGUuUGGC- -5'
21182 3' -59.9 NC_004778.3 + 75754 0.66 0.714514
Target:  5'- gUCGCGCUccucggcGCUGGCgGCaagcauguGCgCAAACaCGg -3'
miRNA:   3'- -AGCGCGA-------CGACCGgCG--------UGgGUUUG-GC- -5'
21182 3' -59.9 NC_004778.3 + 61663 0.66 0.70563
Target:  5'- gCGCGCaUGCUGggccaGCCGCcgAUUCAGAUCGc -3'
miRNA:   3'- aGCGCG-ACGAC-----CGGCG--UGGGUUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 44366 0.66 0.695701
Target:  5'- gCGCGUuaauuUGUUGcGCUGCAUuuGAGCCa -3'
miRNA:   3'- aGCGCG-----ACGAC-CGGCGUGggUUUGGc -5'
21182 3' -59.9 NC_004778.3 + 77371 0.66 0.695701
Target:  5'- cCGCGC-GCUGGUgcaaugCGCACgCGccGGCCGc -3'
miRNA:   3'- aGCGCGaCGACCG------GCGUGgGU--UUGGC- -5'
21182 3' -59.9 NC_004778.3 + 17098 0.66 0.695701
Target:  5'- cCGUGUUGCUGuGCgcgcggCGCGCCU--ACCGu -3'
miRNA:   3'- aGCGCGACGAC-CG------GCGUGGGuuUGGC- -5'
21182 3' -59.9 NC_004778.3 + 4975 0.66 0.691715
Target:  5'- aUCGCGCcuauaaauaaGGCCGCA-CCGAACUGg -3'
miRNA:   3'- -AGCGCGacga------CCGGCGUgGGUUUGGC- -5'
21182 3' -59.9 NC_004778.3 + 69732 0.66 0.675697
Target:  5'- uUUGUGCa-CUGGCUGCGCUCA-GCCa -3'
miRNA:   3'- -AGCGCGacGACCGGCGUGGGUuUGGc -5'
21182 3' -59.9 NC_004778.3 + 48859 0.66 0.665639
Target:  5'- aUUGCGCaGUUGGUCGCGCac-GGCCu -3'
miRNA:   3'- -AGCGCGaCGACCGGCGUGgguUUGGc -5'
21182 3' -59.9 NC_004778.3 + 10695 0.66 0.665639
Target:  5'- aCGUGUugagugUGCgccGCCGCGCCgAGGCCa -3'
miRNA:   3'- aGCGCG------ACGac-CGGCGUGGgUUUGGc -5'
21182 3' -59.9 NC_004778.3 + 63196 0.66 0.665639
Target:  5'- gUGCGCgGCUGGCU--GCCCGGAUg- -3'
miRNA:   3'- aGCGCGaCGACCGGcgUGGGUUUGgc -5'
21182 3' -59.9 NC_004778.3 + 57957 0.67 0.655554
Target:  5'- cUGCGCUgcGCUGGCUGCA---AAGCCa -3'
miRNA:   3'- aGCGCGA--CGACCGGCGUgggUUUGGc -5'
21182 3' -59.9 NC_004778.3 + 33382 0.67 0.655554
Target:  5'- aCGCGCcGUcuuUGGaCGCGCCCA-ACCu -3'
miRNA:   3'- aGCGCGaCG---ACCgGCGUGGGUuUGGc -5'
21182 3' -59.9 NC_004778.3 + 95034 0.67 0.655554
Target:  5'- cCGCGCUGCcGGa-GCAgCCcGGCCa -3'
miRNA:   3'- aGCGCGACGaCCggCGUgGGuUUGGc -5'
21182 3' -59.9 NC_004778.3 + 11977 0.67 0.642417
Target:  5'- cCGCGaccaucgucaacgugGCaGGCCGCugCCGcGCCGc -3'
miRNA:   3'- aGCGCga-------------CGaCCGGCGugGGUuUGGC- -5'
21182 3' -59.9 NC_004778.3 + 27796 0.67 0.642417
Target:  5'- cCGCGCUGCaccgcaugcacgGGCCGCuugucgcGCUCGGGgCGg -3'
miRNA:   3'- aGCGCGACGa-----------CCGGCG-------UGGGUUUgGC- -5'
21182 3' -59.9 NC_004778.3 + 31235 0.67 0.635337
Target:  5'- -gGCGUUGCUGuccguggcGCgCGCACCuCGcGCCGa -3'
miRNA:   3'- agCGCGACGAC--------CG-GCGUGG-GUuUGGC- -5'
21182 3' -59.9 NC_004778.3 + 65930 0.67 0.635337
Target:  5'- gCGCGUUGUgGcGCCGCcgcagcaugaGCCCGAAuCCGc -3'
miRNA:   3'- aGCGCGACGaC-CGGCG----------UGGGUUU-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.