miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21182 5' -56.9 NC_004778.3 + 91140 0.66 0.841224
Target:  5'- -uCGGCGCGcggUCGCgugCgCGCuGGCGCAg -3'
miRNA:   3'- uuGCUGCGC---AGCGaaaG-GCG-UCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 8029 0.66 0.841224
Target:  5'- -cCGACGCGUgccUGCUgcucagCCGCAcGUGCc -3'
miRNA:   3'- uuGCUGCGCA---GCGAaa----GGCGU-CGCGu -5'
21182 5' -56.9 NC_004778.3 + 84314 0.66 0.841224
Target:  5'- cGCGGcCGgGUCGCUcUCCaCAGCGg- -3'
miRNA:   3'- uUGCU-GCgCAGCGAaAGGcGUCGCgu -5'
21182 5' -56.9 NC_004778.3 + 30419 0.66 0.832887
Target:  5'- cGCGACGCGUUGCcgggcgUUGCGGCa-- -3'
miRNA:   3'- uUGCUGCGCAGCGaaa---GGCGUCGcgu -5'
21182 5' -56.9 NC_004778.3 + 44115 0.66 0.832887
Target:  5'- cAugGACGCGggCGUUUgCgGCGGCGaCGg -3'
miRNA:   3'- -UugCUGCGCa-GCGAAaGgCGUCGC-GU- -5'
21182 5' -56.9 NC_004778.3 + 44145 0.66 0.832887
Target:  5'- cAugGACGCGggCGUUUgCgGCGGCGaCGg -3'
miRNA:   3'- -UugCUGCGCa-GCGAAaGgCGUCGC-GU- -5'
21182 5' -56.9 NC_004778.3 + 124465 0.66 0.832887
Target:  5'- aAACaACGCGcCGUggcaaugUCGCGGCGCAc -3'
miRNA:   3'- -UUGcUGCGCaGCGaaa----GGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 56905 0.66 0.832887
Target:  5'- cAACGGaGCGUCGUccgcgCUGCuGGCGCAa -3'
miRNA:   3'- -UUGCUgCGCAGCGaaa--GGCG-UCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 139 0.66 0.824362
Target:  5'- uGCGGCGCG------UCCGCGGCGUAc -3'
miRNA:   3'- uUGCUGCGCagcgaaAGGCGUCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 121433 0.66 0.824362
Target:  5'- -uCGGcCGUGUCGCcg-CCGuCGGCGCc -3'
miRNA:   3'- uuGCU-GCGCAGCGaaaGGC-GUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 26962 0.66 0.824362
Target:  5'- gGACGcGCGUGUCGCgcgUCUGCuacaacCGCAa -3'
miRNA:   3'- -UUGC-UGCGCAGCGaa-AGGCGuc----GCGU- -5'
21182 5' -56.9 NC_004778.3 + 7827 0.66 0.824362
Target:  5'- cGACGGCGUGgacCGCgcgCUGCAGCa-- -3'
miRNA:   3'- -UUGCUGCGCa--GCGaaaGGCGUCGcgu -5'
21182 5' -56.9 NC_004778.3 + 75365 0.66 0.824362
Target:  5'- --gGAcCGCGUCGCUUgcgUCGCuuguaugucGCGCAa -3'
miRNA:   3'- uugCU-GCGCAGCGAAa--GGCGu--------CGCGU- -5'
21182 5' -56.9 NC_004778.3 + 68077 0.66 0.810352
Target:  5'- cGACGACGCGccggCGCcgUCCGCAcaugaagccgaaccuGCgGCGu -3'
miRNA:   3'- -UUGCUGCGCa---GCGaaAGGCGU---------------CG-CGU- -5'
21182 5' -56.9 NC_004778.3 + 90497 0.66 0.806782
Target:  5'- cGCGGCgGCGaccaCGCcgaUCCGCAcGCGCAg -3'
miRNA:   3'- uUGCUG-CGCa---GCGaa-AGGCGU-CGCGU- -5'
21182 5' -56.9 NC_004778.3 + 80106 0.66 0.806782
Target:  5'- aGACGugGUGcCGCacacgUUgUGCGGCGCc -3'
miRNA:   3'- -UUGCugCGCaGCGa----AAgGCGUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 98701 0.66 0.801377
Target:  5'- cAGCGACGCGaacuUucgauggcagccggcCGCgg-CCGCAGCGUg -3'
miRNA:   3'- -UUGCUGCGC----A---------------GCGaaaGGCGUCGCGu -5'
21182 5' -56.9 NC_004778.3 + 38086 0.66 0.797743
Target:  5'- uGCGGCGCGaCGCgcaacagCaCGCuAGCGCGc -3'
miRNA:   3'- uUGCUGCGCaGCGaaa----G-GCG-UCGCGU- -5'
21182 5' -56.9 NC_004778.3 + 32981 0.66 0.796831
Target:  5'- -uCGACGUGUguacguuUGCguccUUCCGCGuGCGCAu -3'
miRNA:   3'- uuGCUGCGCA-------GCGa---AAGGCGU-CGCGU- -5'
21182 5' -56.9 NC_004778.3 + 17093 0.67 0.788551
Target:  5'- cAAgGcCGUGUUGCUgugCgCGCGGCGCGc -3'
miRNA:   3'- -UUgCuGCGCAGCGAaa-G-GCGUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.