miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21186 3' -51.3 NC_004778.3 + 57488 0.69 0.926917
Target:  5'- ---gCCGCGCGACGgaaaaGCCGAcaugGCGCg -3'
miRNA:   3'- caaaGGCGCGCUGCac---UGGUU----UGUGg -5'
21186 3' -51.3 NC_004778.3 + 34418 0.69 0.926917
Target:  5'- --cUCCggcaGCGCGGCGUGcCCGuACugCu -3'
miRNA:   3'- caaAGG----CGCGCUGCACuGGUuUGugG- -5'
21186 3' -51.3 NC_004778.3 + 33677 0.69 0.926917
Target:  5'- ---gCCGCGagugGugGUGACCAcguauGACACg -3'
miRNA:   3'- caaaGGCGCg---CugCACUGGU-----UUGUGg -5'
21186 3' -51.3 NC_004778.3 + 15072 0.69 0.926917
Target:  5'- --cUCCGC-C-ACGUGACCGAGCAa- -3'
miRNA:   3'- caaAGGCGcGcUGCACUGGUUUGUgg -5'
21186 3' -51.3 NC_004778.3 + 17859 0.69 0.932291
Target:  5'- ---aCCGCGCGccgucCGUGACUuuggcGCGCCc -3'
miRNA:   3'- caaaGGCGCGCu----GCACUGGuu---UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 10705 0.69 0.93741
Target:  5'- uGUgcgCCGcCGCGcCGaGGCCAAGCGCa -3'
miRNA:   3'- -CAaa-GGC-GCGCuGCaCUGGUUUGUGg -5'
21186 3' -51.3 NC_004778.3 + 4869 0.69 0.942274
Target:  5'- -gUUgCGCGCGcgccuACGUGACUcgGCGCg -3'
miRNA:   3'- caAAgGCGCGC-----UGCACUGGuuUGUGg -5'
21186 3' -51.3 NC_004778.3 + 57923 0.69 0.942274
Target:  5'- -cUUCCGC-CGACacccUGGCCA-ACGCCu -3'
miRNA:   3'- caAAGGCGcGCUGc---ACUGGUuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 61374 0.69 0.942274
Target:  5'- ---gCCgGCGCGuCGUcGCUGAGCGCCa -3'
miRNA:   3'- caaaGG-CGCGCuGCAcUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 70191 0.69 0.944149
Target:  5'- aGUUUgCGCGCGAgcagaaaauuaucuaCGgcgcCCAAGCGCCg -3'
miRNA:   3'- -CAAAgGCGCGCU---------------GCacu-GGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 124766 0.69 0.946886
Target:  5'- --cUCCGUGCGgccGCGUuAUCGAcgGCACCa -3'
miRNA:   3'- caaAGGCGCGC---UGCAcUGGUU--UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 26069 0.69 0.946886
Target:  5'- ---aCCGC-CGuCGUGGCCAcGGCGCUg -3'
miRNA:   3'- caaaGGCGcGCuGCACUGGU-UUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 103457 0.69 0.951248
Target:  5'- ----gCGUGCGACGUGcagcacGCUcAACGCCg -3'
miRNA:   3'- caaagGCGCGCUGCAC------UGGuUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 32832 0.69 0.951248
Target:  5'- aGUUUCgGaCGCGgcuggccuACGUGGCC-GACAUCg -3'
miRNA:   3'- -CAAAGgC-GCGC--------UGCACUGGuUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 38033 0.68 0.954963
Target:  5'- ---cUCGCGCGaACGUGuuuagauaacuacACgCAAACACCu -3'
miRNA:   3'- caaaGGCGCGC-UGCAC-------------UG-GUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 53374 0.68 0.955364
Target:  5'- aGUUUuuGCGCugUGUGGCCAaagaGACugCu -3'
miRNA:   3'- -CAAAggCGCGcuGCACUGGU----UUGugG- -5'
21186 3' -51.3 NC_004778.3 + 6772 0.68 0.955364
Target:  5'- -cUUCCGCGCGGCucaUGaacacuGCCAGAUGCg -3'
miRNA:   3'- caAAGGCGCGCUGc--AC------UGGUUUGUGg -5'
21186 3' -51.3 NC_004778.3 + 95642 0.68 0.958861
Target:  5'- --gUCCGUGUaaugguucuuuauGACGUGcgcuucAUCGAGCACCa -3'
miRNA:   3'- caaAGGCGCG-------------CUGCAC------UGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 110078 0.68 0.958861
Target:  5'- gGUUUCCGggcaCGCGuuuguucaaaacgGCGUGcgcGCCGAGCGCUu -3'
miRNA:   3'- -CAAAGGC----GCGC-------------UGCAC---UGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 72640 0.68 0.959237
Target:  5'- -cUUCCGuUGCGACaUGACgCAGAUgggGCCg -3'
miRNA:   3'- caAAGGC-GCGCUGcACUG-GUUUG---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.