miRNA display CGI


Results 21 - 40 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21186 3' -51.3 NC_004778.3 + 95181 0.66 0.989109
Target:  5'- --aUgCGCGCGugcuccuugaACaUGGCCGAACACUu -3'
miRNA:   3'- caaAgGCGCGC----------UGcACUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 95000 0.75 0.678778
Target:  5'- cUUUCCGCGCGcgcCGUGcGCCGAcgggcagguGCGCCu -3'
miRNA:   3'- cAAAGGCGCGCu--GCAC-UGGUU---------UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 92975 0.66 0.985976
Target:  5'- -----aGCGCGugGUGGcgcCCAccACACCg -3'
miRNA:   3'- caaaggCGCGCugCACU---GGUu-UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 91650 0.7 0.915402
Target:  5'- ---aCCGCGCGuccuuuACGUuuGACCGAACaaggGCCg -3'
miRNA:   3'- caaaGGCGCGC------UGCA--CUGGUUUG----UGG- -5'
21186 3' -51.3 NC_004778.3 + 91590 0.68 0.966276
Target:  5'- --gUCUGCGCGugcGCGUcGA-UAAGCACCa -3'
miRNA:   3'- caaAGGCGCGC---UGCA-CUgGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 90494 0.68 0.966276
Target:  5'- ----gUGCGCGGCGgcGACC--ACGCCg -3'
miRNA:   3'- caaagGCGCGCUGCa-CUGGuuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 89334 0.66 0.983982
Target:  5'- uUUUCCGUGggccgauugcCGACGUcgcuuugugguucGACCAGACugUa -3'
miRNA:   3'- cAAAGGCGC----------GCUGCA-------------CUGGUUUGugG- -5'
21186 3' -51.3 NC_004778.3 + 87781 0.71 0.859416
Target:  5'- ---gUUGCGCGACGUGAUUAAucaGCGCa -3'
miRNA:   3'- caaaGGCGCGCUGCACUGGUU---UGUGg -5'
21186 3' -51.3 NC_004778.3 + 87110 0.74 0.720334
Target:  5'- -gUUCCGCGCGGCGacauaagaUGG-CAAACAUCg -3'
miRNA:   3'- caAAGGCGCGCUGC--------ACUgGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 86362 0.71 0.859416
Target:  5'- --aUCgGCGCGACc---CCAAGCACCu -3'
miRNA:   3'- caaAGgCGCGCUGcacuGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 81746 0.79 0.481764
Target:  5'- --aUCCgGCGCGGCGgguggcgGACCGAcuGCGCCg -3'
miRNA:   3'- caaAGG-CGCGCUGCa------CUGGUU--UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 81224 0.68 0.959237
Target:  5'- ---aCUGCGUGAUGcGACUguucaaAAGCACCa -3'
miRNA:   3'- caaaGGCGCGCUGCaCUGG------UUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 80718 0.68 0.966276
Target:  5'- ----aCGCaC-AUGUGGCCGAGCACCg -3'
miRNA:   3'- caaagGCGcGcUGCACUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 80135 0.77 0.573287
Target:  5'- ---gUCGCGCGACGgGACgGGACACUg -3'
miRNA:   3'- caaaGGCGCGCUGCaCUGgUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 79893 0.73 0.780036
Target:  5'- -cUUCCGCGaCGGCaacuuuugGUGGCCAAACAa- -3'
miRNA:   3'- caAAGGCGC-GCUG--------CACUGGUUUGUgg -5'
21186 3' -51.3 NC_004778.3 + 79221 0.8 0.415733
Target:  5'- ---aCgGCGCGugGUGACCGucgcGCGCCa -3'
miRNA:   3'- caaaGgCGCGCugCACUGGUu---UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 76287 0.72 0.843947
Target:  5'- ---gCCGCGCGcCGUGAacggcucgcauuuggCAAGCGCCg -3'
miRNA:   3'- caaaGGCGCGCuGCACUg--------------GUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 74318 0.66 0.990455
Target:  5'- ---cUCGCGCugauaccuuacGACGUGcGCCAAaaacacgcGCACCg -3'
miRNA:   3'- caaaGGCGCG-----------CUGCAC-UGGUU--------UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 74119 0.7 0.915402
Target:  5'- ---gCUGCGCGGCGUGcCCGAuCAUUu -3'
miRNA:   3'- caaaGGCGCGCUGCACuGGUUuGUGG- -5'
21186 3' -51.3 NC_004778.3 + 72640 0.68 0.959237
Target:  5'- -cUUCCGuUGCGACaUGACgCAGAUgggGCCg -3'
miRNA:   3'- caAAGGC-GCGCUGcACUG-GUUUG---UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.