miRNA display CGI


Results 21 - 40 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21186 3' -51.3 NC_004778.3 + 55995 0.68 0.959237
Target:  5'- aGUggcgCCGCGuUGGCGUcGAUUAGACACa -3'
miRNA:   3'- -CAaa--GGCGC-GCUGCA-CUGGUUUGUGg -5'
21186 3' -51.3 NC_004778.3 + 26022 0.68 0.964942
Target:  5'- --gUCCGCcaacauggcggcaCGACGUGuccGCCAAACACg -3'
miRNA:   3'- caaAGGCGc------------GCUGCAC---UGGUUUGUGg -5'
21186 3' -51.3 NC_004778.3 + 41220 0.66 0.984172
Target:  5'- -gUUUCGCGUuuGACGggcGGCC--GCGCCg -3'
miRNA:   3'- caAAGGCGCG--CUGCa--CUGGuuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 118053 0.66 0.989109
Target:  5'- --aUuuGCGCcuuGCGUG-CCAAGCugCc -3'
miRNA:   3'- caaAggCGCGc--UGCACuGGUUUGugG- -5'
21186 3' -51.3 NC_004778.3 + 18286 0.7 0.915402
Target:  5'- uGUUUCCGCGCGA-GUuuCCcGACgACCu -3'
miRNA:   3'- -CAAAGGCGCGCUgCAcuGGuUUG-UGG- -5'
21186 3' -51.3 NC_004778.3 + 4869 0.69 0.942274
Target:  5'- -gUUgCGCGCGcgccuACGUGACUcgGCGCg -3'
miRNA:   3'- caAAgGCGCGC-----UGCACUGGuuUGUGg -5'
21186 3' -51.3 NC_004778.3 + 91590 0.68 0.966276
Target:  5'- --gUCUGCGCGugcGCGUcGA-UAAGCACCa -3'
miRNA:   3'- caaAGGCGCGC---UGCA-CUgGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 65968 0.66 0.990327
Target:  5'- ---cCCGCGCcgaagaaGGCGcuuucGCCGAACGCCc -3'
miRNA:   3'- caaaGGCGCG-------CUGCac---UGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 124766 0.69 0.946886
Target:  5'- --cUCCGUGCGgccGCGUuAUCGAcgGCACCa -3'
miRNA:   3'- caaAGGCGCGC---UGCAcUGGUU--UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 40759 0.66 0.990455
Target:  5'- ---gCUGCGCGGCGacaucccGuCCAAuuGCGCCa -3'
miRNA:   3'- caaaGGCGCGCUGCa------CuGGUU--UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 90494 0.68 0.966276
Target:  5'- ----gUGCGCGGCGgcGACC--ACGCCg -3'
miRNA:   3'- caaagGCGCGCUGCa-CUGGuuUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 45209 0.68 0.959237
Target:  5'- uGUUUuuGCGCGACGaauuuAUCAAACaaguGCCg -3'
miRNA:   3'- -CAAAggCGCGCUGCac---UGGUUUG----UGG- -5'
21186 3' -51.3 NC_004778.3 + 114914 0.67 0.977698
Target:  5'- --gUCCgGCaCGACGUGACgCAcGCGCg -3'
miRNA:   3'- caaAGG-CGcGCUGCACUG-GUuUGUGg -5'
21186 3' -51.3 NC_004778.3 + 124997 0.67 0.982196
Target:  5'- ---gCCGCGCGAUuccgGACgaAGACACUg -3'
miRNA:   3'- caaaGGCGCGCUGca--CUGg-UUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 127208 0.66 0.985976
Target:  5'- --gUCCGCG-GGCGUGACguuucugucgauCAGcucgcGCACCc -3'
miRNA:   3'- caaAGGCGCgCUGCACUG------------GUU-----UGUGG- -5'
21186 3' -51.3 NC_004778.3 + 95181 0.66 0.989109
Target:  5'- --aUgCGCGCGugcuccuugaACaUGGCCGAACACUu -3'
miRNA:   3'- caaAgGCGCGC----------UGcACUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 21630 0.71 0.88221
Target:  5'- cGUUUCC-UGCG-CGUuGCCAAACGCUa -3'
miRNA:   3'- -CAAAGGcGCGCuGCAcUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 71193 0.7 0.90287
Target:  5'- -aUUCUGCGC-ACacGACCAAAUGCCg -3'
miRNA:   3'- caAAGGCGCGcUGcaCUGGUUUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 98189 0.69 0.926917
Target:  5'- aGUUUCUcgGCGCGAgGUGcgcgcGCCAcggacagcAACGCCu -3'
miRNA:   3'- -CAAAGG--CGCGCUgCAC-----UGGU--------UUGUGG- -5'
21186 3' -51.3 NC_004778.3 + 57923 0.69 0.942274
Target:  5'- -cUUCCGC-CGACacccUGGCCA-ACGCCu -3'
miRNA:   3'- caAAGGCGcGCUGc---ACUGGUuUGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.