miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 3' -56.8 NC_004778.3 + 8469 0.66 0.868974
Target:  5'- gGCGCCgggGCAGcggGCGCgGCCcGcgCCc -3'
miRNA:   3'- -CGCGGaaaCGUUa--CGCGgCGGcCa-GG- -5'
21190 3' -56.8 NC_004778.3 + 115284 0.66 0.864477
Target:  5'- uCGCauugUUUGCuAUGCGCCgaaaaaauugaggcgGCCGG-CCg -3'
miRNA:   3'- cGCGg---AAACGuUACGCGG---------------CGGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 97314 0.66 0.861436
Target:  5'- aGCGCCgucgUGCAG-GCGCUGaaGGa-- -3'
miRNA:   3'- -CGCGGaa--ACGUUaCGCGGCggCCagg -5'
21190 3' -56.8 NC_004778.3 + 95277 0.66 0.861436
Target:  5'- aUGCUgc-GCAGcuUGuCGCCGCCGGcgaCCg -3'
miRNA:   3'- cGCGGaaaCGUU--AC-GCGGCGGCCa--GG- -5'
21190 3' -56.8 NC_004778.3 + 117677 0.66 0.861436
Target:  5'- gGCGUgc-UGCuGUGCGCCGuggaCCGG-CCg -3'
miRNA:   3'- -CGCGgaaACGuUACGCGGC----GGCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 2448 0.66 0.861436
Target:  5'- -gGCCcgagUGCGGcaCGCCGCUGGUUa -3'
miRNA:   3'- cgCGGaa--ACGUUacGCGGCGGCCAGg -5'
21190 3' -56.8 NC_004778.3 + 81734 0.66 0.861436
Target:  5'- gGCGCC--UGCGAUauccgGCGCgGCgGGUg- -3'
miRNA:   3'- -CGCGGaaACGUUA-----CGCGgCGgCCAgg -5'
21190 3' -56.8 NC_004778.3 + 61286 0.66 0.861436
Target:  5'- cGCGCUa---CGAUGCGCCGUCG--CCg -3'
miRNA:   3'- -CGCGGaaacGUUACGCGGCGGCcaGG- -5'
21190 3' -56.8 NC_004778.3 + 31244 0.66 0.861436
Target:  5'- uUGUCcUUGUug-GCGUCGCCGGUgugCCu -3'
miRNA:   3'- cGCGGaAACGuuaCGCGGCGGCCA---GG- -5'
21190 3' -56.8 NC_004778.3 + 63431 0.66 0.860671
Target:  5'- gGCGaCg--GCGAUGCGUCGCCaaauucuGGcCCu -3'
miRNA:   3'- -CGCgGaaaCGUUACGCGGCGG-------CCaGG- -5'
21190 3' -56.8 NC_004778.3 + 108416 0.66 0.856814
Target:  5'- uUGCCgcgGCGcagguggacgcgcugGUGCGCCGCgGG-CUg -3'
miRNA:   3'- cGCGGaaaCGU---------------UACGCGGCGgCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 96534 0.66 0.853691
Target:  5'- cGCGUCUgcgggcgUGCAc-GCGCCGUgcaCGG-CCa -3'
miRNA:   3'- -CGCGGAa------ACGUuaCGCGGCG---GCCaGG- -5'
21190 3' -56.8 NC_004778.3 + 33558 0.66 0.853691
Target:  5'- uGCGUaagUGCGucuauuUGCGCacCGCUGGUCa -3'
miRNA:   3'- -CGCGgaaACGUu-----ACGCG--GCGGCCAGg -5'
21190 3' -56.8 NC_004778.3 + 25269 0.66 0.853691
Target:  5'- aGCGCauaaucuccaCUUUGCAAaacGCGCagcgcacuucguCGCCGcGUCCc -3'
miRNA:   3'- -CGCG----------GAAACGUUa--CGCG------------GCGGC-CAGG- -5'
21190 3' -56.8 NC_004778.3 + 90013 0.66 0.845744
Target:  5'- -aGUCg--GCAAaGCGgCGCCGGUgCu -3'
miRNA:   3'- cgCGGaaaCGUUaCGCgGCGGCCAgG- -5'
21190 3' -56.8 NC_004778.3 + 109111 0.66 0.845744
Target:  5'- uCGaCCcgUGCGuUGUGCCGCCgauGGUgCCg -3'
miRNA:   3'- cGC-GGaaACGUuACGCGGCGG---CCA-GG- -5'
21190 3' -56.8 NC_004778.3 + 85281 0.66 0.845744
Target:  5'- cGCGUCcaUGCcGU-CGCCGCCGcaaacgcccgcGUCCa -3'
miRNA:   3'- -CGCGGaaACGuUAcGCGGCGGC-----------CAGG- -5'
21190 3' -56.8 NC_004778.3 + 19280 0.66 0.844938
Target:  5'- uGCGCCUUUaguuugucguacgGCAGcugcacUGUGCCguauacggaccgGCCGGUgCCc -3'
miRNA:   3'- -CGCGGAAA-------------CGUU------ACGCGG------------CGGCCA-GG- -5'
21190 3' -56.8 NC_004778.3 + 57466 0.66 0.837601
Target:  5'- uGUGCCUggGCAA-GCuGCCGCUG--CCg -3'
miRNA:   3'- -CGCGGAaaCGUUaCG-CGGCGGCcaGG- -5'
21190 3' -56.8 NC_004778.3 + 92969 0.66 0.837601
Target:  5'- cGUGCUUacGCAuguuuGUGCaacgacaaagucGCCGCCGG-CCg -3'
miRNA:   3'- -CGCGGAaaCGU-----UACG------------CGGCGGCCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.