Results 1 - 20 of 80 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21190 | 3' | -56.8 | NC_004778.3 | + | 8469 | 0.66 | 0.868974 |
Target: 5'- gGCGCCgggGCAGcggGCGCgGCCcGcgCCc -3' miRNA: 3'- -CGCGGaaaCGUUa--CGCGgCGGcCa-GG- -5' |
|||||||
21190 | 3' | -56.8 | NC_004778.3 | + | 115284 | 0.66 | 0.864477 |
Target: 5'- uCGCauugUUUGCuAUGCGCCgaaaaaauugaggcgGCCGG-CCg -3' miRNA: 3'- cGCGg---AAACGuUACGCGG---------------CGGCCaGG- -5' |
|||||||
21190 | 3' | -56.8 | NC_004778.3 | + | 31244 | 0.66 | 0.861436 |
Target: 5'- uUGUCcUUGUug-GCGUCGCCGGUgugCCu -3' miRNA: 3'- cGCGGaAACGuuaCGCGGCGGCCA---GG- -5' |
|||||||
21190 | 3' | -56.8 | NC_004778.3 | + | 61286 | 0.66 | 0.861436 |
Target: 5'- cGCGCUa---CGAUGCGCCGUCG--CCg -3' miRNA: 3'- -CGCGGaaacGUUACGCGGCGGCcaGG- -5' |
|||||||
21190 | 3' | -56.8 | NC_004778.3 | + | 95277 | 0.66 | 0.861436 |
Target: 5'- aUGCUgc-GCAGcuUGuCGCCGCCGGcgaCCg -3' miRNA: 3'- cGCGGaaaCGUU--AC-GCGGCGGCCa--GG- -5' |
|||||||
21190 | 3' | -56.8 | NC_004778.3 | + | 117677 | 0.66 | 0.861436 |
Target: 5'- gGCGUgc-UGCuGUGCGCCGuggaCCGG-CCg -3' miRNA: 3'- -CGCGgaaACGuUACGCGGC----GGCCaGG- -5' |
|||||||
21190 | 3' | -56.8 | NC_004778.3 | + | 2448 | 0.66 | 0.861436 |
Target: 5'- -gGCCcgagUGCGGcaCGCCGCUGGUUa -3' miRNA: 3'- cgCGGaa--ACGUUacGCGGCGGCCAGg -5' |
|||||||
21190 | 3' | -56.8 | NC_004778.3 | + | 81734 | 0.66 | 0.861436 |
Target: 5'- gGCGCC--UGCGAUauccgGCGCgGCgGGUg- -3' miRNA: 3'- -CGCGGaaACGUUA-----CGCGgCGgCCAgg -5' |
|||||||
21190 | 3' | -56.8 | NC_004778.3 | + | 97314 | 0.66 | 0.861436 |
Target: 5'- aGCGCCgucgUGCAG-GCGCUGaaGGa-- -3' miRNA: 3'- -CGCGGaa--ACGUUaCGCGGCggCCagg -5' |
|||||||
21190 | 3' | -56.8 | NC_004778.3 | + | 63431 | 0.66 | 0.860671 |
Target: 5'- gGCGaCg--GCGAUGCGUCGCCaaauucuGGcCCu -3' miRNA: 3'- -CGCgGaaaCGUUACGCGGCGG-------CCaGG- -5' |
|||||||
21190 | 3' | -56.8 | NC_004778.3 | + | 108416 | 0.66 | 0.856814 |
Target: 5'- uUGCCgcgGCGcagguggacgcgcugGUGCGCCGCgGG-CUg -3' miRNA: 3'- cGCGGaaaCGU---------------UACGCGGCGgCCaGG- -5' |
|||||||
21190 | 3' | -56.8 | NC_004778.3 | + | 25269 | 0.66 | 0.853691 |
Target: 5'- aGCGCauaaucuccaCUUUGCAAaacGCGCagcgcacuucguCGCCGcGUCCc -3' miRNA: 3'- -CGCG----------GAAACGUUa--CGCG------------GCGGC-CAGG- -5' |
|||||||
21190 | 3' | -56.8 | NC_004778.3 | + | 33558 | 0.66 | 0.853691 |
Target: 5'- uGCGUaagUGCGucuauuUGCGCacCGCUGGUCa -3' miRNA: 3'- -CGCGgaaACGUu-----ACGCG--GCGGCCAGg -5' |
|||||||
21190 | 3' | -56.8 | NC_004778.3 | + | 96534 | 0.66 | 0.853691 |
Target: 5'- cGCGUCUgcgggcgUGCAc-GCGCCGUgcaCGG-CCa -3' miRNA: 3'- -CGCGGAa------ACGUuaCGCGGCG---GCCaGG- -5' |
|||||||
21190 | 3' | -56.8 | NC_004778.3 | + | 85281 | 0.66 | 0.845744 |
Target: 5'- cGCGUCcaUGCcGU-CGCCGCCGcaaacgcccgcGUCCa -3' miRNA: 3'- -CGCGGaaACGuUAcGCGGCGGC-----------CAGG- -5' |
|||||||
21190 | 3' | -56.8 | NC_004778.3 | + | 90013 | 0.66 | 0.845744 |
Target: 5'- -aGUCg--GCAAaGCGgCGCCGGUgCu -3' miRNA: 3'- cgCGGaaaCGUUaCGCgGCGGCCAgG- -5' |
|||||||
21190 | 3' | -56.8 | NC_004778.3 | + | 109111 | 0.66 | 0.845744 |
Target: 5'- uCGaCCcgUGCGuUGUGCCGCCgauGGUgCCg -3' miRNA: 3'- cGC-GGaaACGUuACGCGGCGG---CCA-GG- -5' |
|||||||
21190 | 3' | -56.8 | NC_004778.3 | + | 19280 | 0.66 | 0.844938 |
Target: 5'- uGCGCCUUUaguuugucguacgGCAGcugcacUGUGCCguauacggaccgGCCGGUgCCc -3' miRNA: 3'- -CGCGGAAA-------------CGUU------ACGCGG------------CGGCCA-GG- -5' |
|||||||
21190 | 3' | -56.8 | NC_004778.3 | + | 92969 | 0.66 | 0.837601 |
Target: 5'- cGUGCUUacGCAuguuuGUGCaacgacaaagucGCCGCCGG-CCg -3' miRNA: 3'- -CGCGGAaaCGU-----UACG------------CGGCGGCCaGG- -5' |
|||||||
21190 | 3' | -56.8 | NC_004778.3 | + | 57466 | 0.66 | 0.837601 |
Target: 5'- uGUGCCUggGCAA-GCuGCCGCUG--CCg -3' miRNA: 3'- -CGCGGAaaCGUUaCG-CGGCGGCcaGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home