miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 5' -55.9 NC_004778.3 + 109482 0.66 0.885762
Target:  5'- -aGGUcgGCGCUGaCGCACgu--CACUUGu -3'
miRNA:   3'- agCCG--CGCGAC-GCGUGauuuGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 103902 0.66 0.885762
Target:  5'- cUGGCGCGCgaUGCGCGaUAAGCGgUa- -3'
miRNA:   3'- aGCCGCGCG--ACGCGUgAUUUGUgGac -5'
21190 5' -55.9 NC_004778.3 + 118864 0.66 0.885762
Target:  5'- aCGGCGCGCgcaCGCaACUGAGgACaaaUGc -3'
miRNA:   3'- aGCCGCGCGac-GCG-UGAUUUgUGg--AC- -5'
21190 5' -55.9 NC_004778.3 + 10491 0.66 0.885762
Target:  5'- cUGGCGuCGgUGUGCGCc-AACGCCg- -3'
miRNA:   3'- aGCCGC-GCgACGCGUGauUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 3229 0.66 0.885762
Target:  5'- gUGGCGCGCcGUGauCAC-GGACACCa- -3'
miRNA:   3'- aGCCGCGCGaCGC--GUGaUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 9905 0.66 0.885762
Target:  5'- -gGGCGCGgUGUGCGCUuuaguGAAaACCg- -3'
miRNA:   3'- agCCGCGCgACGCGUGA-----UUUgUGGac -5'
21190 5' -55.9 NC_004778.3 + 61974 0.66 0.885762
Target:  5'- gUCGGgGCGCuUGC-CGCU--GCGCgUGg -3'
miRNA:   3'- -AGCCgCGCG-ACGcGUGAuuUGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 17844 0.66 0.885059
Target:  5'- cUCGGCGCGCguaacaccGCGCGCcguccgUGAcuuuggcGCGCCc- -3'
miRNA:   3'- -AGCCGCGCGa-------CGCGUG------AUU-------UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 65493 0.66 0.878622
Target:  5'- gUUGGUGCGCUucGCGUAUUcagucAGCACCc- -3'
miRNA:   3'- -AGCCGCGCGA--CGCGUGAu----UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 115082 0.66 0.878622
Target:  5'- gUCGcGCGCGUUGCaGCGCauuucGAAcCGCCUc -3'
miRNA:   3'- -AGC-CGCGCGACG-CGUGa----UUU-GUGGAc -5'
21190 5' -55.9 NC_004778.3 + 58379 0.66 0.878622
Target:  5'- -aGGC-CGCUGUGCagcgGCUGGACGCg-- -3'
miRNA:   3'- agCCGcGCGACGCG----UGAUUUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 733 0.66 0.878622
Target:  5'- --aGCGCaCUGUGCACgu--CACCUGc -3'
miRNA:   3'- agcCGCGcGACGCGUGauuuGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 34453 0.66 0.878622
Target:  5'- -gGGCaCGCUGCGCGuCgagGAgcGCACCg- -3'
miRNA:   3'- agCCGcGCGACGCGU-Ga--UU--UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 9013 0.66 0.871253
Target:  5'- gCGGCGgGCUGCauuuguCGC-AGGCGCCg- -3'
miRNA:   3'- aGCCGCgCGACGc-----GUGaUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 33089 0.66 0.871253
Target:  5'- gCGGCcCGCUGcCGCGCU--ACACgUa -3'
miRNA:   3'- aGCCGcGCGAC-GCGUGAuuUGUGgAc -5'
21190 5' -55.9 NC_004778.3 + 11638 0.66 0.871253
Target:  5'- cUGGUGCGCcgcuUGCGCuugUUGGACACUa- -3'
miRNA:   3'- aGCCGCGCG----ACGCGu--GAUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 91590 0.66 0.871253
Target:  5'- gUCuGCGCG-UGCGCGucgaUAAGCACCa- -3'
miRNA:   3'- -AGcCGCGCgACGCGUg---AUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 109638 0.66 0.863662
Target:  5'- -aGGUcgGCGCUGaCGCACguuaaagauAGCACUUGu -3'
miRNA:   3'- agCCG--CGCGAC-GCGUGau-------UUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 17106 0.66 0.862891
Target:  5'- cUGuGCGCGCgGCGCGcCUAccguggcAACGCCg- -3'
miRNA:   3'- aGC-CGCGCGaCGCGU-GAU-------UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 59470 0.66 0.855855
Target:  5'- gCGGCGgGCgcGCGCAUUcgGUACCUa -3'
miRNA:   3'- aGCCGCgCGa-CGCGUGAuuUGUGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.