miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21196 3' -53.9 NC_004778.3 + 123974 0.66 0.95715
Target:  5'- aCACGUUgGCCauGGCaGGCGCgcaguuGCCu -3'
miRNA:   3'- -GUGCAGgCGG--CCGcUCGUGaaau--UGG- -5'
21196 3' -53.9 NC_004778.3 + 41482 0.66 0.956766
Target:  5'- aCGCG-CCGCCuGGCGugugagcAGCGCUacAACg -3'
miRNA:   3'- -GUGCaGGCGG-CCGC-------UCGUGAaaUUGg -5'
21196 3' -53.9 NC_004778.3 + 106881 0.66 0.955992
Target:  5'- gGCGUUaaaGCCGaGgaggaucagacaacCGAGCGCUUgAACCa -3'
miRNA:   3'- gUGCAGg--CGGC-C--------------GCUCGUGAAaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 111280 0.66 0.953209
Target:  5'- gCGCGUuagcgccuuggCCGCCguGGUGAGCGUUUUGAUg -3'
miRNA:   3'- -GUGCA-----------GGCGG--CCGCUCGUGAAAUUGg -5'
21196 3' -53.9 NC_004778.3 + 126907 0.66 0.953209
Target:  5'- gGCGgcgCCGCaugcuGGacaaguCGAGCACUUcGGCCa -3'
miRNA:   3'- gUGCa--GGCGg----CC------GCUCGUGAAaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 38126 0.66 0.953209
Target:  5'- cCGCGUCCGCa-GUGaAGCGCa--GGCCc -3'
miRNA:   3'- -GUGCAGGCGgcCGC-UCGUGaaaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 108343 0.66 0.953209
Target:  5'- aACGUCCGCuCcGCGGGCugcaccgcGCUgacGCCu -3'
miRNA:   3'- gUGCAGGCG-GcCGCUCG--------UGAaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 86641 0.66 0.949032
Target:  5'- aACGUCCGCCGcCGAcaaCGCgugcGCCa -3'
miRNA:   3'- gUGCAGGCGGCcGCUc--GUGaaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 143 0.66 0.944614
Target:  5'- gCGCGUCCG-CGGCGuacAGCGCc--AGCa -3'
miRNA:   3'- -GUGCAGGCgGCCGC---UCGUGaaaUUGg -5'
21196 3' -53.9 NC_004778.3 + 91365 0.66 0.944614
Target:  5'- gCGCGUCgCGCCGcaGCG-GCAU-UUGACUc -3'
miRNA:   3'- -GUGCAG-GCGGC--CGCuCGUGaAAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 118783 0.66 0.944614
Target:  5'- gCGCGgcgCgGCCGGCGcGCACaauuacgaGGCCc -3'
miRNA:   3'- -GUGCa--GgCGGCCGCuCGUGaaa-----UUGG- -5'
21196 3' -53.9 NC_004778.3 + 81786 0.66 0.939953
Target:  5'- gCGCGgcCUGCCGGgGcGGCGuCUgUAACCa -3'
miRNA:   3'- -GUGCa-GGCGGCCgC-UCGU-GAaAUUGG- -5'
21196 3' -53.9 NC_004778.3 + 38752 0.66 0.939953
Target:  5'- -cCGgCCGCUGGCuGGGCAC----GCCg -3'
miRNA:   3'- guGCaGGCGGCCG-CUCGUGaaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 36005 0.66 0.939953
Target:  5'- gAUGgcaCCGCaCGGCGGGCAac---GCCa -3'
miRNA:   3'- gUGCa--GGCG-GCCGCUCGUgaaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 82617 0.66 0.939473
Target:  5'- gGCGgcgagCCGCCGcGCGAuagcgucGCAUgucGACCa -3'
miRNA:   3'- gUGCa----GGCGGC-CGCU-------CGUGaaaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 55281 0.66 0.935046
Target:  5'- gUACGagUCGCUGGCGcGCGCagcGGCCg -3'
miRNA:   3'- -GUGCa-GGCGGCCGCuCGUGaaaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 14536 0.67 0.929892
Target:  5'- uCACGUCgUGCCGGaCGAccGCGCguccaugUgcGCCa -3'
miRNA:   3'- -GUGCAG-GCGGCC-GCU--CGUGa------AauUGG- -5'
21196 3' -53.9 NC_004778.3 + 30725 0.67 0.924491
Target:  5'- uGCaUCUGCCGGagaaggagcaCGAGCGCga-AGCCa -3'
miRNA:   3'- gUGcAGGCGGCC----------GCUCGUGaaaUUGG- -5'
21196 3' -53.9 NC_004778.3 + 68151 0.67 0.924491
Target:  5'- gCACGUCgGCgaCGGCGcaucguAGCGCgucuACCg -3'
miRNA:   3'- -GUGCAGgCG--GCCGC------UCGUGaaauUGG- -5'
21196 3' -53.9 NC_004778.3 + 23522 0.67 0.918841
Target:  5'- aCGCGUaucgaaUCGCCGGCGcGCAaguauauGCCg -3'
miRNA:   3'- -GUGCA------GGCGGCCGCuCGUgaaau--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.