miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21197 3' -53.7 NC_004778.3 + 52141 0.66 0.952047
Target:  5'- aGCGCgCGUGCCcuucgcgaaccacucGCUGGUauugGAGAACa -3'
miRNA:   3'- -CGCGgGCAUGG---------------CGACCGcga-UUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 54611 0.66 0.950357
Target:  5'- gGCGCCC--ACCGacuacgGGCGC--AAGGCg -3'
miRNA:   3'- -CGCGGGcaUGGCga----CCGCGauUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 84314 0.66 0.950357
Target:  5'- cGCGgCCGggUCGCUcuccacagcgGGCGCUAAu--- -3'
miRNA:   3'- -CGCgGGCauGGCGA----------CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 41465 0.66 0.950357
Target:  5'- gGCGCUguuaaaaaauuaCGcGCCGcCUGGCGUgu-GAGCa -3'
miRNA:   3'- -CGCGG------------GCaUGGC-GACCGCGauuUUUG- -5'
21197 3' -53.7 NC_004778.3 + 22374 0.66 0.950357
Target:  5'- uCGCCCGUGgCGUUGGgGuCUucguGGAUg -3'
miRNA:   3'- cGCGGGCAUgGCGACCgC-GAuu--UUUG- -5'
21197 3' -53.7 NC_004778.3 + 29429 0.66 0.945959
Target:  5'- aGCGCUCGUuuugugcaaucCUGCUGGCGUa------ -3'
miRNA:   3'- -CGCGGGCAu----------GGCGACCGCGauuuuug -5'
21197 3' -53.7 NC_004778.3 + 113179 0.66 0.943201
Target:  5'- aGUGCCCGU--CGCacgaguaguuuauugUGGCGCUgcuuGAGAAUg -3'
miRNA:   3'- -CGCGGGCAugGCG---------------ACCGCGA----UUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 62874 0.66 0.941313
Target:  5'- aCGCUCGUGCCcgaaaaGCgaggucGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUGG------CGa-----CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 43307 0.66 0.941313
Target:  5'- -gGCCCGUGCgCGUUgaacucGGCGCgcaugcGGACa -3'
miRNA:   3'- cgCGGGCAUG-GCGA------CCGCGauu---UUUG- -5'
21197 3' -53.7 NC_004778.3 + 23995 0.66 0.941313
Target:  5'- aCGCUCGUACCagaaaaGCggggucGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUGG------CGa-----CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 63690 0.66 0.941313
Target:  5'- cCGCCCGgcUCGCU-GCGCc--AAACg -3'
miRNA:   3'- cGCGGGCauGGCGAcCGCGauuUUUG- -5'
21197 3' -53.7 NC_004778.3 + 109683 0.66 0.941313
Target:  5'- aCGCUCGUGCCcgaaaaGCgaggucGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUGG------CGa-----CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 23798 0.66 0.941313
Target:  5'- aCGCUCGUACCagaaaaGCggggucGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUGG------CGa-----CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 24193 0.66 0.941313
Target:  5'- aCGCUCGUACCagaaaaGCggggucGGCGCUGAc--- -3'
miRNA:   3'- cGCGGGCAUGG------CGa-----CCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 11635 0.66 0.936415
Target:  5'- uCGCUgGUgcGCCGCUuGCGCUuguuGGACa -3'
miRNA:   3'- cGCGGgCA--UGGCGAcCGCGAuu--UUUG- -5'
21197 3' -53.7 NC_004778.3 + 33842 0.66 0.936415
Target:  5'- cGCGCucaacgCCGauaACCGCUGGUGCa------ -3'
miRNA:   3'- -CGCG------GGCa--UGGCGACCGCGauuuuug -5'
21197 3' -53.7 NC_004778.3 + 116158 0.66 0.931265
Target:  5'- cUGCCCGUGuuggaugCGCUGGCGaggGAuuACg -3'
miRNA:   3'- cGCGGGCAUg------GCGACCGCga-UUuuUG- -5'
21197 3' -53.7 NC_004778.3 + 33740 0.66 0.931265
Target:  5'- -aGCCCGcgaaagcggAUUGCUGGCGCggcacuGGCa -3'
miRNA:   3'- cgCGGGCa--------UGGCGACCGCGauuu--UUG- -5'
21197 3' -53.7 NC_004778.3 + 67511 0.66 0.931265
Target:  5'- aGCGCCaacugcaaCGUuacaauuuGCCGUUGGCGCaguuuAACg -3'
miRNA:   3'- -CGCGG--------GCA--------UGGCGACCGCGauuu-UUG- -5'
21197 3' -53.7 NC_004778.3 + 38627 0.66 0.931265
Target:  5'- aGUGCCCG-GCCgaGCUGGUaGCUGGc--- -3'
miRNA:   3'- -CGCGGGCaUGG--CGACCG-CGAUUuuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.