miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21200 5' -54.7 NC_004778.3 + 41691 0.66 0.94819
Target:  5'- aGUCGAUgGCGCgggcaUUG-GUAUGGGg -3'
miRNA:   3'- gCGGCUGgCGCGaaa--AGCuCAUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 105466 0.66 0.943802
Target:  5'- gGCCGAucCCGCGCc--UCGgacggaAGcGCGGGa -3'
miRNA:   3'- gCGGCU--GGCGCGaaaAGC------UCaUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 34313 0.66 0.943802
Target:  5'- uGCCGGCgCGUGCUggaaCuGGUGCaGGGc -3'
miRNA:   3'- gCGGCUG-GCGCGAaaa-GcUCAUG-CCC- -5'
21200 5' -54.7 NC_004778.3 + 33966 0.66 0.943802
Target:  5'- uGCCGGCCaaCGaaaUUUCGgucacgucggGGUGCGGGg -3'
miRNA:   3'- gCGGCUGGc-GCga-AAAGC----------UCAUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 34503 0.66 0.938703
Target:  5'- cCGCCGACuCGCGCUaccgcgugcugcUUauguccaUCaAGUGCGGcGg -3'
miRNA:   3'- -GCGGCUG-GCGCGA------------AA-------AGcUCAUGCC-C- -5'
21200 5' -54.7 NC_004778.3 + 6552 0.66 0.934317
Target:  5'- gCGCCGACCcCGCUUUcCaAGUACa-- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAaGcUCAUGccc -5'
21200 5' -54.7 NC_004778.3 + 93041 0.66 0.929217
Target:  5'- gGUCGGCCGCGUgga-CGGcgAUGGGg -3'
miRNA:   3'- gCGGCUGGCGCGaaaaGCUcaUGCCC- -5'
21200 5' -54.7 NC_004778.3 + 10665 0.67 0.918299
Target:  5'- gCGCCGGCCGCGCcgcgccCGAa-GCGuGGc -3'
miRNA:   3'- -GCGGCUGGCGCGaaaa--GCUcaUGC-CC- -5'
21200 5' -54.7 NC_004778.3 + 109578 0.67 0.908876
Target:  5'- gCGCCGACgcaCGUuuaaagauagcacucGCUUUUCGGGUACa-- -3'
miRNA:   3'- -GCGGCUG---GCG---------------CGAAAAGCUCAUGccc -5'
21200 5' -54.7 NC_004778.3 + 62769 0.67 0.908876
Target:  5'- gCGCCGACgcaCGUccaaagauagcacucGCUUUUCGGGUACa-- -3'
miRNA:   3'- -GCGGCUG---GCG---------------CGAAAAGCUCAUGccc -5'
21200 5' -54.7 NC_004778.3 + 109422 0.67 0.908876
Target:  5'- gCGCCGACgcaCGUccaaagauagcacucGCUUUUCGGGUACa-- -3'
miRNA:   3'- -GCGGCUG---GCG---------------CGAAAAGCUCAUGccc -5'
21200 5' -54.7 NC_004778.3 + 62703 0.67 0.908876
Target:  5'- gCGCCGACgcaCGUccaaagauagcacucGCUUUUCGGGUACa-- -3'
miRNA:   3'- -GCGGCUG---GCG---------------CGAAAAGCUCAUGccc -5'
21200 5' -54.7 NC_004778.3 + 29659 0.67 0.906426
Target:  5'- gCGUCGACCcUGCUUUUUGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 29527 0.67 0.906426
Target:  5'- gCGUCGACCcUGCUUUUUGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 66760 0.68 0.886861
Target:  5'- gCGCCGACCuCaCUUUUCGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGcGAAAAGCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 42642 0.68 0.886861
Target:  5'- cCGCCGACgGUGCa---CGAGUGCa-- -3'
miRNA:   3'- -GCGGCUGgCGCGaaaaGCUCAUGccc -5'
21200 5' -54.7 NC_004778.3 + 62578 0.68 0.884791
Target:  5'- gCGCCGACgccuaaagauagcaCuCGCUUUUCGGGUACa-- -3'
miRNA:   3'- -GCGGCUG--------------GcGCGAAAAGCUCAUGccc -5'
21200 5' -54.7 NC_004778.3 + 91227 0.68 0.879883
Target:  5'- gGCCGugCGCaGCga--CGAGUACGcGa -3'
miRNA:   3'- gCGGCugGCG-CGaaaaGCUCAUGC-Cc -5'
21200 5' -54.7 NC_004778.3 + 94956 0.68 0.879883
Target:  5'- uGCCGGCCGCGCacggucCGAG-ACGc- -3'
miRNA:   3'- gCGGCUGGCGCGaaaa--GCUCaUGCcc -5'
21200 5' -54.7 NC_004778.3 + 124816 0.68 0.872684
Target:  5'- gCGCCGACCcCGCUUUUa-AGUACa-- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAgcUCAUGccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.