miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21201 5' -58.7 NC_004778.3 + 121637 0.66 0.755127
Target:  5'- uCGGCCGaGCGCACgUugGUUucGGgGAAGu -3'
miRNA:   3'- -GCCGGCaCGCGUG-GugCGA--UCgCUUU- -5'
21201 5' -58.7 NC_004778.3 + 15503 0.66 0.735678
Target:  5'- --aUCGUGCGCcauccGCCGCGCUcgcucuccgcgAGCGAGGa -3'
miRNA:   3'- gccGGCACGCG-----UGGUGCGA-----------UCGCUUU- -5'
21201 5' -58.7 NC_004778.3 + 65290 0.66 0.735678
Target:  5'- gCGGCCacggGCGCGaCGCGCUgAGUGAc- -3'
miRNA:   3'- -GCCGGca--CGCGUgGUGCGA-UCGCUuu -5'
21201 5' -58.7 NC_004778.3 + 17045 0.66 0.734695
Target:  5'- aCGuGCCGccuaagcUGCGCgACCGCGCgcuuGCGGu- -3'
miRNA:   3'- -GC-CGGC-------ACGCG-UGGUGCGau--CGCUuu -5'
21201 5' -58.7 NC_004778.3 + 80582 0.66 0.725812
Target:  5'- aGGCCGUGCGCgACCAa-CUGcGCa--- -3'
miRNA:   3'- gCCGGCACGCG-UGGUgcGAU-CGcuuu -5'
21201 5' -58.7 NC_004778.3 + 32907 0.66 0.715866
Target:  5'- aCGGCgCGUGCaCGCC-CGCagacGCGAAAc -3'
miRNA:   3'- -GCCG-GCACGcGUGGuGCGau--CGCUUU- -5'
21201 5' -58.7 NC_004778.3 + 55989 0.66 0.705847
Target:  5'- uCGGacaGUG-GCGCCGCGUUGGCGu-- -3'
miRNA:   3'- -GCCgg-CACgCGUGGUGCGAUCGCuuu -5'
21201 5' -58.7 NC_004778.3 + 65014 0.66 0.705847
Target:  5'- gGGCauucGCGCACCGCGU--GCGAGc -3'
miRNA:   3'- gCCGgca-CGCGUGGUGCGauCGCUUu -5'
21201 5' -58.7 NC_004778.3 + 52065 0.66 0.705847
Target:  5'- cCGGCgCGUGCGCAUugcaccagCGCGC-GGCGc-- -3'
miRNA:   3'- -GCCG-GCACGCGUG--------GUGCGaUCGCuuu -5'
21201 5' -58.7 NC_004778.3 + 53666 0.66 0.704841
Target:  5'- aGGCCGUGUuuGCGCaCAUGCUugccgccAGCGc-- -3'
miRNA:   3'- gCCGGCACG--CGUG-GUGCGA-------UCGCuuu -5'
21201 5' -58.7 NC_004778.3 + 112336 0.67 0.695765
Target:  5'- aCGGUag-GCGCGCCGCGCgcacAGCa--- -3'
miRNA:   3'- -GCCGgcaCGCGUGGUGCGa---UCGcuuu -5'
21201 5' -58.7 NC_004778.3 + 113778 0.67 0.68563
Target:  5'- uGGUCGUGUuuaauuuguuGCGCCGCGUUugcuugaucaGGCGAu- -3'
miRNA:   3'- gCCGGCACG----------CGUGGUGCGA----------UCGCUuu -5'
21201 5' -58.7 NC_004778.3 + 74155 0.67 0.675451
Target:  5'- uCGGCCGcUGCGC---GCGCcAGCGAc- -3'
miRNA:   3'- -GCCGGC-ACGCGuggUGCGaUCGCUuu -5'
21201 5' -58.7 NC_004778.3 + 104149 0.67 0.675451
Target:  5'- gCGGCgacgaaGUGCGCugCGCGUUuugcaaAGUGGAGa -3'
miRNA:   3'- -GCCGg-----CACGCGugGUGCGA------UCGCUUU- -5'
21201 5' -58.7 NC_004778.3 + 17095 0.67 0.675451
Target:  5'- aGGCCGUGuUGCugUGCGCgcGGCGc-- -3'
miRNA:   3'- gCCGGCAC-GCGugGUGCGa-UCGCuuu -5'
21201 5' -58.7 NC_004778.3 + 125994 0.67 0.675451
Target:  5'- aGGCC--GCGCAUgACGCUGcGUGGGAg -3'
miRNA:   3'- gCCGGcaCGCGUGgUGCGAU-CGCUUU- -5'
21201 5' -58.7 NC_004778.3 + 96583 0.67 0.675451
Target:  5'- gGGUCGUGgaGCACCcUGCUAGCc--- -3'
miRNA:   3'- gCCGGCACg-CGUGGuGCGAUCGcuuu -5'
21201 5' -58.7 NC_004778.3 + 43305 0.67 0.67443
Target:  5'- aCGGcCCGUGCGCGuugaacuCgGCGCgcauGCGGAc -3'
miRNA:   3'- -GCC-GGCACGCGU-------GgUGCGau--CGCUUu -5'
21201 5' -58.7 NC_004778.3 + 7822 0.67 0.665235
Target:  5'- uCGGCCGacgGCGUggACCGCGCgcugcAGCaGAAc -3'
miRNA:   3'- -GCCGGCa--CGCG--UGGUGCGa----UCG-CUUu -5'
21201 5' -58.7 NC_004778.3 + 61915 0.67 0.654993
Target:  5'- aCGGCCG-GCGaauuaAUgGCGUUGGCGGc- -3'
miRNA:   3'- -GCCGGCaCGCg----UGgUGCGAUCGCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.