miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21202 5' -56.2 NC_004778.3 + 82084 0.66 0.874983
Target:  5'- cGCCGCACGCUgUGCaGCgGCG-GCAu- -3'
miRNA:   3'- -CGGUGUGUGA-GCGgCGgCGCaUGUuu -5'
21202 5' -56.2 NC_004778.3 + 34743 0.66 0.874983
Target:  5'- aGCgCGCACGCUCGCgGUucagCGCGaaGCAGu -3'
miRNA:   3'- -CG-GUGUGUGAGCGgCG----GCGCa-UGUUu -5'
21202 5' -56.2 NC_004778.3 + 102704 0.66 0.874983
Target:  5'- cCCGCGCuGCagGCCGCgGCGUuuGCGGc -3'
miRNA:   3'- cGGUGUG-UGagCGGCGgCGCA--UGUUu -5'
21202 5' -56.2 NC_004778.3 + 55962 0.66 0.874983
Target:  5'- uGCUGCACGCacaugUCGCCGCCcaCGUccuGCAu- -3'
miRNA:   3'- -CGGUGUGUG-----AGCGGCGGc-GCA---UGUuu -5'
21202 5' -56.2 NC_004778.3 + 25795 0.66 0.867519
Target:  5'- uGCCGcCACGCUgCcCCGCCGCGcuagugcugucUGCAc- -3'
miRNA:   3'- -CGGU-GUGUGA-GcGGCGGCGC-----------AUGUuu -5'
21202 5' -56.2 NC_004778.3 + 34501 0.66 0.867519
Target:  5'- cGCCGCcgACUCGCgcuaCCGCGUGCu-- -3'
miRNA:   3'- -CGGUGugUGAGCGgc--GGCGCAUGuuu -5'
21202 5' -56.2 NC_004778.3 + 121443 0.66 0.867519
Target:  5'- cGCCGC-CG-UCGgCGCCGCGcACAu- -3'
miRNA:   3'- -CGGUGuGUgAGCgGCGGCGCaUGUuu -5'
21202 5' -56.2 NC_004778.3 + 19476 0.66 0.867519
Target:  5'- cGUCGCACguaAUggGCgCGCCGaCGUGCAAAu -3'
miRNA:   3'- -CGGUGUG---UGagCG-GCGGC-GCAUGUUU- -5'
21202 5' -56.2 NC_004778.3 + 38754 0.66 0.867519
Target:  5'- gGCCGCugGCUgGgCaCGCCGagaaGUACGc- -3'
miRNA:   3'- -CGGUGugUGAgC-G-GCGGCg---CAUGUuu -5'
21202 5' -56.2 NC_004778.3 + 12000 0.66 0.859837
Target:  5'- gGCCGC-UGCcgCGCCGCCGCuuaucACAAAc -3'
miRNA:   3'- -CGGUGuGUGa-GCGGCGGCGca---UGUUU- -5'
21202 5' -56.2 NC_004778.3 + 2049 0.66 0.859837
Target:  5'- gGCCGC-CAC-CGCaGCCGCGUuccuCAu- -3'
miRNA:   3'- -CGGUGuGUGaGCGgCGGCGCAu---GUuu -5'
21202 5' -56.2 NC_004778.3 + 5140 0.66 0.859837
Target:  5'- uGCC-CACGC-CGgCGCCGCGcuuCAGc -3'
miRNA:   3'- -CGGuGUGUGaGCgGCGGCGCau-GUUu -5'
21202 5' -56.2 NC_004778.3 + 10675 0.66 0.858275
Target:  5'- cGCCGCgcccgaagcgugGCACguguugagugugCGCCGCCGCGc-CGAGg -3'
miRNA:   3'- -CGGUG------------UGUGa-----------GCGGCGGCGCauGUUU- -5'
21202 5' -56.2 NC_004778.3 + 40743 0.66 0.851942
Target:  5'- aGCgCACGCGC-CGCuUGCUGCGcgGCGAc -3'
miRNA:   3'- -CG-GUGUGUGaGCG-GCGGCGCa-UGUUu -5'
21202 5' -56.2 NC_004778.3 + 89635 0.66 0.851942
Target:  5'- uCCACGCGC-CGacaauCGgCGCGUGCAAc -3'
miRNA:   3'- cGGUGUGUGaGCg----GCgGCGCAUGUUu -5'
21202 5' -56.2 NC_004778.3 + 106860 0.66 0.851942
Target:  5'- uGCCGCGcCACUuugUGCCGCC-CaUGCAAAc -3'
miRNA:   3'- -CGGUGU-GUGA---GCGGCGGcGcAUGUUU- -5'
21202 5' -56.2 NC_004778.3 + 21014 0.66 0.851942
Target:  5'- cGCgGCGCACcagCGCguccaccugCGCCGCG-GCAAAa -3'
miRNA:   3'- -CGgUGUGUGa--GCG---------GCGGCGCaUGUUU- -5'
21202 5' -56.2 NC_004778.3 + 36027 0.66 0.851942
Target:  5'- cGCCAucCGCAUgggcgUGCCGUaCGUGUACAGc -3'
miRNA:   3'- -CGGU--GUGUGa----GCGGCG-GCGCAUGUUu -5'
21202 5' -56.2 NC_004778.3 + 90663 0.66 0.851942
Target:  5'- cGUCAgCGCGgUCGaCGCUGCGUACu-- -3'
miRNA:   3'- -CGGU-GUGUgAGCgGCGGCGCAUGuuu -5'
21202 5' -56.2 NC_004778.3 + 126382 0.66 0.851942
Target:  5'- uGCCGCAUgugUGCCuuGCCGCGUugAc- -3'
miRNA:   3'- -CGGUGUGugaGCGG--CGGCGCAugUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.