miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21208 3' -54.7 NC_004778.3 + 90506 0.66 0.919553
Target:  5'- cGCGgucAGUGGCcgcGCAguuacacaaccaagaACAGCUGCAGCGuCGg -3'
miRNA:   3'- -CGU---UCGCCG---UGU---------------UGUCGGUGUCGU-GC- -5'
21208 3' -54.7 NC_004778.3 + 21571 0.66 0.917212
Target:  5'- uGCuuuGCGGCAaGAUGGCC-CAGC-CGc -3'
miRNA:   3'- -CGuu-CGCCGUgUUGUCGGuGUCGuGC- -5'
21208 3' -54.7 NC_004778.3 + 39863 0.66 0.911186
Target:  5'- cGCGuGCGGCGCGACuuGUUuuacCAGUACa -3'
miRNA:   3'- -CGUuCGCCGUGUUGu-CGGu---GUCGUGc -5'
21208 3' -54.7 NC_004778.3 + 17081 0.66 0.911186
Target:  5'- uCAAGCuGGCAUuuagucggcgaGGCuGCgACAGCAUGa -3'
miRNA:   3'- cGUUCG-CCGUG-----------UUGuCGgUGUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 25403 0.66 0.911186
Target:  5'- cCAAGCGuacgcGUACAACGGCgGCucGCugGa -3'
miRNA:   3'- cGUUCGC-----CGUGUUGUCGgUGu-CGugC- -5'
21208 3' -54.7 NC_004778.3 + 113935 0.66 0.911186
Target:  5'- -aGAGCGaGCGCGGCGGaUgGC-GCACGa -3'
miRNA:   3'- cgUUCGC-CGUGUUGUC-GgUGuCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 95617 0.66 0.911186
Target:  5'- -uGAGC-GCGCAgGCuGCCGCGuGCACGu -3'
miRNA:   3'- cgUUCGcCGUGU-UGuCGGUGU-CGUGC- -5'
21208 3' -54.7 NC_004778.3 + 65751 0.66 0.911186
Target:  5'- gGCGuuUGGCGCAGCgAGCCggGCGGUgACGg -3'
miRNA:   3'- -CGUucGCCGUGUUG-UCGG--UGUCG-UGC- -5'
21208 3' -54.7 NC_004778.3 + 31750 0.66 0.911186
Target:  5'- uUAAGCGGCGCGucgcCAGCUccaacggguuguAUAGCgACGa -3'
miRNA:   3'- cGUUCGCCGUGUu---GUCGG------------UGUCG-UGC- -5'
21208 3' -54.7 NC_004778.3 + 21085 0.66 0.911186
Target:  5'- aCAGGCGucaGCGCGguGCAGCcCGCGGaGCGg -3'
miRNA:   3'- cGUUCGC---CGUGU--UGUCG-GUGUCgUGC- -5'
21208 3' -54.7 NC_004778.3 + 16927 0.66 0.909329
Target:  5'- cGCGAgccguuacGCGGCGCAcaugcACcggcucgaguucucGGCCGCuGGCGCGa -3'
miRNA:   3'- -CGUU--------CGCCGUGU-----UG--------------UCGGUG-UCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 112192 0.66 0.908705
Target:  5'- uGCAcuucguucucGGCGcccucgcGCAUAGCGGCCGCgcgguccaggugauAGCACGc -3'
miRNA:   3'- -CGU----------UCGC-------CGUGUUGUCGGUG--------------UCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 7690 0.66 0.907449
Target:  5'- gGCAucAGCGaccCGCAAaucgggucgcuaaacCAGCUACGGCGCGc -3'
miRNA:   3'- -CGU--UCGCc--GUGUU---------------GUCGGUGUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 95779 0.66 0.904908
Target:  5'- cGCGcGGCaGCGCGcCGGCCGCGcuGCGCc -3'
miRNA:   3'- -CGU-UCGcCGUGUuGUCGGUGU--CGUGc -5'
21208 3' -54.7 NC_004778.3 + 27044 0.66 0.904908
Target:  5'- gGCGAGCccGCugAccAUAGCCACGGCu-- -3'
miRNA:   3'- -CGUUCGc-CGugU--UGUCGGUGUCGugc -5'
21208 3' -54.7 NC_004778.3 + 103647 0.66 0.904908
Target:  5'- aGCGcGGCGGgGCAGCguGGCgGCAaCGCGg -3'
miRNA:   3'- -CGU-UCGCCgUGUUG--UCGgUGUcGUGC- -5'
21208 3' -54.7 NC_004778.3 + 72058 0.66 0.904908
Target:  5'- nGCaAAGUGGCGCGcaaacuguuGCAGCgugCGCAGCGu- -3'
miRNA:   3'- -CG-UUCGCCGUGU---------UGUCG---GUGUCGUgc -5'
21208 3' -54.7 NC_004778.3 + 65281 0.66 0.904908
Target:  5'- uCAAGCu---CGGCGGCCACGgGCGCGa -3'
miRNA:   3'- cGUUCGccguGUUGUCGGUGU-CGUGC- -5'
21208 3' -54.7 NC_004778.3 + 89899 0.66 0.904267
Target:  5'- cGCAAGCGGCuuGCGcGCGuuguuguaaaaauGCUGCAGUGCa -3'
miRNA:   3'- -CGUUCGCCG--UGU-UGU-------------CGGUGUCGUGc -5'
21208 3' -54.7 NC_004778.3 + 9429 0.66 0.898384
Target:  5'- gGCGuGGCGcGCACGuuggacACGGCCgucgucucgGCGGCGCa -3'
miRNA:   3'- -CGU-UCGC-CGUGU------UGUCGG---------UGUCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.