miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21209 3' -59 NC_004778.3 + 77357 0.66 0.721467
Target:  5'- cUCCuuGUgGCGCGCCGcGCGCU-GgUGCa -3'
miRNA:   3'- aAGGu-CG-UGCGCGGC-CGUGAaCgACG- -5'
21209 3' -59 NC_004778.3 + 62737 0.66 0.721467
Target:  5'- gUCuUGGCAaGCGacaUGGCGCUacUGCUGCg -3'
miRNA:   3'- aAG-GUCGUgCGCg--GCCGUGA--ACGACG- -5'
21209 3' -59 NC_004778.3 + 34600 0.66 0.711431
Target:  5'- gUgCGGCGCGCaacccaCCGGCAC--GUUGCa -3'
miRNA:   3'- aAgGUCGUGCGc-----GGCCGUGaaCGACG- -5'
21209 3' -59 NC_004778.3 + 96415 0.66 0.711431
Target:  5'- -gCCAGCACGCGgCaagGGUGCUggaacGCgGCg -3'
miRNA:   3'- aaGGUCGUGCGCgG---CCGUGAa----CGaCG- -5'
21209 3' -59 NC_004778.3 + 59378 0.66 0.711431
Target:  5'- gUCCAgGUugGCGCCGGUgg--GCgcagGCc -3'
miRNA:   3'- aAGGU-CGugCGCGGCCGugaaCGa---CG- -5'
21209 3' -59 NC_004778.3 + 109901 0.66 0.710423
Target:  5'- uUUUUAGCACGCGuUUGGCuuCUUGCcucucguUGCa -3'
miRNA:   3'- -AAGGUCGUGCGC-GGCCGu-GAACG-------ACG- -5'
21209 3' -59 NC_004778.3 + 34030 0.66 0.701327
Target:  5'- --gUAGCGCGCGUCGcuaagcugcgacGCGCUUGCUu- -3'
miRNA:   3'- aagGUCGUGCGCGGC------------CGUGAACGAcg -5'
21209 3' -59 NC_004778.3 + 82684 0.66 0.701327
Target:  5'- -aCCAuggcacGUACGCGCUGGCc---GCUGCc -3'
miRNA:   3'- aaGGU------CGUGCGCGGCCGugaaCGACG- -5'
21209 3' -59 NC_004778.3 + 10667 0.66 0.700313
Target:  5'- -gCCGGC-CGCGCCgcgcccgaagcguGGCACgUGUUGa -3'
miRNA:   3'- aaGGUCGuGCGCGG-------------CCGUGaACGACg -5'
21209 3' -59 NC_004778.3 + 68072 0.66 0.691162
Target:  5'- -cUCAGCgacgACGCGCCGGCGCcguCcGCa -3'
miRNA:   3'- aaGGUCG----UGCGCGGCCGUGaacGaCG- -5'
21209 3' -59 NC_004778.3 + 86306 0.66 0.690143
Target:  5'- -aCguGCgGCGCGCCGcggcgccgucgaaGCGCUUGCgcaGCa -3'
miRNA:   3'- aaGguCG-UGCGCGGC-------------CGUGAACGa--CG- -5'
21209 3' -59 NC_004778.3 + 23097 0.66 0.685039
Target:  5'- uUUCCAGCGCGUccauuauuugucuuuGCgcgcaaucaaacCGGgGCUgggGCUGCg -3'
miRNA:   3'- -AAGGUCGUGCG---------------CG------------GCCgUGAa--CGACG- -5'
21209 3' -59 NC_004778.3 + 112147 0.66 0.680948
Target:  5'- -aCCAGCACGCaUUGGUugUUGg-GCg -3'
miRNA:   3'- aaGGUCGUGCGcGGCCGugAACgaCG- -5'
21209 3' -59 NC_004778.3 + 103559 0.66 0.67172
Target:  5'- -gCCAGCGCccacggucGCGCCGGCACacacccuaauuaucGCcGCa -3'
miRNA:   3'- aaGGUCGUG--------CGCGGCCGUGaa------------CGaCG- -5'
21209 3' -59 NC_004778.3 + 92887 0.67 0.660406
Target:  5'- aUUC-GCGCGCGCCGGUuccaaaUGCgGCg -3'
miRNA:   3'- aAGGuCGUGCGCGGCCGuga---ACGaCG- -5'
21209 3' -59 NC_004778.3 + 59414 0.67 0.650096
Target:  5'- cUCCAGCuccagacggauGCGCGCCagaauGGCGuc-GCUGCc -3'
miRNA:   3'- aAGGUCG-----------UGCGCGG-----CCGUgaaCGACG- -5'
21209 3' -59 NC_004778.3 + 34491 0.67 0.639771
Target:  5'- -aCCAGUuuaACGcCGCCGacucGCGCUaccgcgUGCUGCu -3'
miRNA:   3'- aaGGUCG---UGC-GCGGC----CGUGA------ACGACG- -5'
21209 3' -59 NC_004778.3 + 96545 0.67 0.630473
Target:  5'- -gCguGCACGCGCCGuGCACggccauaaagucuaGCgUGCg -3'
miRNA:   3'- aaGguCGUGCGCGGC-CGUGaa------------CG-ACG- -5'
21209 3' -59 NC_004778.3 + 29337 0.67 0.62944
Target:  5'- --gCGGCGCGCGCUggGGUGCgccaagcgGCUGUa -3'
miRNA:   3'- aagGUCGUGCGCGG--CCGUGaa------CGACG- -5'
21209 3' -59 NC_004778.3 + 62681 0.67 0.62944
Target:  5'- uUUUguGCACGUaGUCGGUgcACUUGUUGUa -3'
miRNA:   3'- -AAGguCGUGCG-CGGCCG--UGAACGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.