miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21211 5' -47.6 NC_004778.3 + 17114 0.66 0.999353
Target:  5'- gCGGCGCGCcuaccguggcAAcgccGUUGCCAGCGacacguucUUGGAg -3'
miRNA:   3'- gGCUGCGCG----------UU----UAACGGUUGU--------AACUU- -5'
21211 5' -47.6 NC_004778.3 + 79365 0.66 0.999195
Target:  5'- aUCGAuCGCGCGGucugUGCCAAUAa---- -3'
miRNA:   3'- -GGCU-GCGCGUUua--ACGGUUGUaacuu -5'
21211 5' -47.6 NC_004778.3 + 94626 0.66 0.999195
Target:  5'- -aGugGUGCAAAUgcgcgaUGCCGACAa---- -3'
miRNA:   3'- ggCugCGCGUUUA------ACGGUUGUaacuu -5'
21211 5' -47.6 NC_004778.3 + 106514 0.66 0.999195
Target:  5'- -aGACGCGCuuuuaGCCAggcuaaauACGUUGAu -3'
miRNA:   3'- ggCUGCGCGuuuaaCGGU--------UGUAACUu -5'
21211 5' -47.6 NC_004778.3 + 88389 0.66 0.999195
Target:  5'- -gGACGCGCGAc-UGCgAGCggUGGAc -3'
miRNA:   3'- ggCUGCGCGUUuaACGgUUGuaACUU- -5'
21211 5' -47.6 NC_004778.3 + 101871 0.66 0.999195
Target:  5'- gUGGCGCGCAGGcagcgGUCcACGUUGGc -3'
miRNA:   3'- gGCUGCGCGUUUaa---CGGuUGUAACUu -5'
21211 5' -47.6 NC_004778.3 + 27033 0.66 0.999195
Target:  5'- uCCGACGCGUcuAUUG-CGACGggaaUUGGg -3'
miRNA:   3'- -GGCUGCGCGuuUAACgGUUGU----AACUu -5'
21211 5' -47.6 NC_004778.3 + 45597 0.66 0.999086
Target:  5'- cCUGGCGCGCcuucuGcauagccgcgcccucGUcGCCGGCGUUGAGu -3'
miRNA:   3'- -GGCUGCGCGu----U---------------UAaCGGUUGUAACUU- -5'
21211 5' -47.6 NC_004778.3 + 43324 0.66 0.999006
Target:  5'- cUCGGCGCGCA---UGCgGACAa---- -3'
miRNA:   3'- -GGCUGCGCGUuuaACGgUUGUaacuu -5'
21211 5' -47.6 NC_004778.3 + 61292 0.66 0.999006
Target:  5'- aCGAUGCGCcguc-GCCGACGUgcGAGa -3'
miRNA:   3'- gGCUGCGCGuuuaaCGGUUGUAa-CUU- -5'
21211 5' -47.6 NC_004778.3 + 46990 0.66 0.999006
Target:  5'- gCCGACGCGCuug-UGCgAAuCAUcGAc -3'
miRNA:   3'- -GGCUGCGCGuuuaACGgUU-GUAaCUu -5'
21211 5' -47.6 NC_004778.3 + 58686 0.66 0.999006
Target:  5'- uUGGCGCGCA--UUGCCAAUu----- -3'
miRNA:   3'- gGCUGCGCGUuuAACGGUUGuaacuu -5'
21211 5' -47.6 NC_004778.3 + 85938 0.66 0.99878
Target:  5'- cCUGACGCaGCGAAUuuUGUCAAUuuguugcgccgGUUGAAc -3'
miRNA:   3'- -GGCUGCG-CGUUUA--ACGGUUG-----------UAACUU- -5'
21211 5' -47.6 NC_004778.3 + 2382 0.66 0.99878
Target:  5'- gCCGAaacuucCGCGCGGug-GCCGACGUg--- -3'
miRNA:   3'- -GGCU------GCGCGUUuaaCGGUUGUAacuu -5'
21211 5' -47.6 NC_004778.3 + 8028 0.67 0.998625
Target:  5'- gCCGACGCGUgccugcugcucagccGcAcgUGCCAGCG-UGAc -3'
miRNA:   3'- -GGCUGCGCG---------------U-UuaACGGUUGUaACUu -5'
21211 5' -47.6 NC_004778.3 + 10067 0.67 0.998512
Target:  5'- uCCGACGCaGUAAAcugcGCCAGCucacuAUUGAc -3'
miRNA:   3'- -GGCUGCG-CGUUUaa--CGGUUG-----UAACUu -5'
21211 5' -47.6 NC_004778.3 + 97403 0.67 0.998482
Target:  5'- gCGGCGCGCAAGgaaGCCGccgguucuaaucuGCAgcGAGu -3'
miRNA:   3'- gGCUGCGCGUUUaa-CGGU-------------UGUaaCUU- -5'
21211 5' -47.6 NC_004778.3 + 127886 0.67 0.998195
Target:  5'- aCGGCGCGCAugaacaUGCCGuuguGCAU-GAGc -3'
miRNA:   3'- gGCUGCGCGUuua---ACGGU----UGUAaCUU- -5'
21211 5' -47.6 NC_004778.3 + 63328 0.67 0.998195
Target:  5'- uUGcUGUGCGAcUUGUCGGCGUUGAAc -3'
miRNA:   3'- gGCuGCGCGUUuAACGGUUGUAACUU- -5'
21211 5' -47.6 NC_004778.3 + 100866 0.67 0.998195
Target:  5'- uUGAgGUGCGGAUUGgCCAGC-UUGGc -3'
miRNA:   3'- gGCUgCGCGUUUAAC-GGUUGuAACUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.