miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21215 3' -57.7 NC_004778.3 + 91287 0.66 0.835208
Target:  5'- ---uAGCGUGgaGGUGuCGa-GCGGCGCa -3'
miRNA:   3'- guuuUUGCACg-CCGC-GCggCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 72721 0.66 0.835208
Target:  5'- gAAAAACGUGCGcUGUGUuaacauugaucgUGCGGuCGCu -3'
miRNA:   3'- gUUUUUGCACGCcGCGCG------------GCGCC-GCG- -5'
21215 3' -57.7 NC_004778.3 + 19367 0.66 0.835208
Target:  5'- aCAAAcGCGUGCccggaaaccuGGUcCGCC-UGGCGCa -3'
miRNA:   3'- -GUUUuUGCACG----------CCGcGCGGcGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 30679 0.66 0.835208
Target:  5'- gGGGAugGUgGCGGCuuGCaCGC-GCGCu -3'
miRNA:   3'- gUUUUugCA-CGCCGcgCG-GCGcCGCG- -5'
21215 3' -57.7 NC_004778.3 + 8449 0.66 0.826884
Target:  5'- aCAGAuuCGUaauuaaagGCGGCGCcgggGCaGCGGgCGCg -3'
miRNA:   3'- -GUUUuuGCA--------CGCCGCG----CGgCGCC-GCG- -5'
21215 3' -57.7 NC_004778.3 + 67701 0.66 0.826884
Target:  5'- cCGGAacAAgGUGUGGUGCGUauacauCGUgaGGCGCa -3'
miRNA:   3'- -GUUU--UUgCACGCCGCGCG------GCG--CCGCG- -5'
21215 3' -57.7 NC_004778.3 + 45061 0.66 0.826884
Target:  5'- ---cGACGaGCGcuaccaucaGCGCGCgaGCGGCGUc -3'
miRNA:   3'- guuuUUGCaCGC---------CGCGCGg-CGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 94991 0.66 0.826884
Target:  5'- -cGAGGCGUucuuucCGcGCGCGCCGU-GCGCc -3'
miRNA:   3'- guUUUUGCAc-----GC-CGCGCGGCGcCGCG- -5'
21215 3' -57.7 NC_004778.3 + 112388 0.66 0.826884
Target:  5'- --cAAGCGcGCGGuCGCGCagcuuagGCGGCa- -3'
miRNA:   3'- guuUUUGCaCGCC-GCGCGg------CGCCGcg -5'
21215 3' -57.7 NC_004778.3 + 25650 0.66 0.818384
Target:  5'- --cAAGCuUGCGcGgGgGCCgGCGGCGUg -3'
miRNA:   3'- guuUUUGcACGC-CgCgCGG-CGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 32968 0.66 0.818384
Target:  5'- -----cUGUGCGGcCGCGUCGaCGuGUGUa -3'
miRNA:   3'- guuuuuGCACGCC-GCGCGGC-GC-CGCG- -5'
21215 3' -57.7 NC_004778.3 + 30715 0.66 0.818384
Target:  5'- aCGAAGcACGcUGCGGC-CGCgGCcGGCuGCc -3'
miRNA:   3'- -GUUUU-UGC-ACGCCGcGCGgCG-CCG-CG- -5'
21215 3' -57.7 NC_004778.3 + 49014 0.66 0.818384
Target:  5'- ----uGCGcGCGGUGCGgC-UGGCGCc -3'
miRNA:   3'- guuuuUGCaCGCCGCGCgGcGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 8466 0.66 0.817525
Target:  5'- cCAGAAGCuaaugGCcgguucaGGCGCGUuccgcaagCGCGGCGUg -3'
miRNA:   3'- -GUUUUUGca---CG-------CCGCGCG--------GCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 34520 0.66 0.817525
Target:  5'- ----cGCGUGCuGCuuauguccaucaaGUGCgGCGGCGUg -3'
miRNA:   3'- guuuuUGCACGcCG-------------CGCGgCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 114349 0.66 0.809716
Target:  5'- --uGAGCGguuUGacccuGCGCGCCGCGG-GCg -3'
miRNA:   3'- guuUUUGC---ACgc---CGCGCGGCGCCgCG- -5'
21215 3' -57.7 NC_004778.3 + 42484 0.66 0.809716
Target:  5'- uGGAAACGUuggggguugaggGCGGCGUGgU-CGGCGUg -3'
miRNA:   3'- gUUUUUGCA------------CGCCGCGCgGcGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 33745 0.66 0.809716
Target:  5'- gCGAAAGCGgauUGCuGGCGCGgCacuggcaucgaGUGGUGCu -3'
miRNA:   3'- -GUUUUUGC---ACG-CCGCGCgG-----------CGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 94838 0.66 0.809716
Target:  5'- ---cAACGUGcCGGUGgGuuGCGcGcCGCa -3'
miRNA:   3'- guuuUUGCAC-GCCGCgCggCGC-C-GCG- -5'
21215 3' -57.7 NC_004778.3 + 102070 0.66 0.809716
Target:  5'- uCAAGGcAUGUGCGGCGCGUguUGG-GCc -3'
miRNA:   3'- -GUUUU-UGCACGCCGCGCGgcGCCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.