miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21216 3' -54.1 NC_004778.3 + 22187 0.66 0.942617
Target:  5'- aACGCCgaaGcCCGCAAAACGUuuaGCa-- -3'
miRNA:   3'- gUGCGGa--C-GGCGUUUUGCAug-CGcac -5'
21216 3' -54.1 NC_004778.3 + 17934 0.66 0.942617
Target:  5'- gUACGCCUGuuCCGU--GACGgACGUGUa -3'
miRNA:   3'- -GUGCGGAC--GGCGuuUUGCaUGCGCAc -5'
21216 3' -54.1 NC_004778.3 + 25468 0.66 0.937818
Target:  5'- uGCGCCuUGCCGguuugacaagaCGAAGCuuGUGCGCuGUGu -3'
miRNA:   3'- gUGCGG-ACGGC-----------GUUUUG--CAUGCG-CAC- -5'
21216 3' -54.1 NC_004778.3 + 113147 0.66 0.937818
Target:  5'- gACGCCUGCCGgc--ACGUuuacaacCGCGUc -3'
miRNA:   3'- gUGCGGACGGCguuuUGCAu------GCGCAc -5'
21216 3' -54.1 NC_004778.3 + 85316 0.66 0.937818
Target:  5'- cCAUGCCgucGCCGCcgcAAACGccCGCGUc -3'
miRNA:   3'- -GUGCGGa--CGGCGu--UUUGCauGCGCAc -5'
21216 3' -54.1 NC_004778.3 + 85286 0.66 0.937818
Target:  5'- cCAUGCCgucGCCGCcgcAAACGccCGCGUc -3'
miRNA:   3'- -GUGCGGa--CGGCGu--UUUGCauGCGCAc -5'
21216 3' -54.1 NC_004778.3 + 77371 0.66 0.937818
Target:  5'- cCGCGCgCUGgUGCAAuGCGcACGCGc- -3'
miRNA:   3'- -GUGCG-GACgGCGUUuUGCaUGCGCac -5'
21216 3' -54.1 NC_004778.3 + 125723 0.66 0.937818
Target:  5'- gCACGCCgaaaUGCCGC---GCGUugGUa-- -3'
miRNA:   3'- -GUGCGG----ACGGCGuuuUGCAugCGcac -5'
21216 3' -54.1 NC_004778.3 + 38232 0.66 0.937324
Target:  5'- -gUGCCUcUUGCAAAAacguuccaauaucCGUGCGCGUGa -3'
miRNA:   3'- guGCGGAcGGCGUUUU-------------GCAUGCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 125598 0.66 0.932769
Target:  5'- uGCGCCgugUGUUaCGAAACGUACGUGa- -3'
miRNA:   3'- gUGCGG---ACGGcGUUUUGCAUGCGCac -5'
21216 3' -54.1 NC_004778.3 + 20923 0.66 0.932769
Target:  5'- aUACGCCaugGCCGUcucGAACG-ACGCGc- -3'
miRNA:   3'- -GUGCGGa--CGGCGu--UUUGCaUGCGCac -5'
21216 3' -54.1 NC_004778.3 + 58270 0.66 0.927469
Target:  5'- aAUGCUcGCCGCGcuucAAGCGcUGCuGCGUGu -3'
miRNA:   3'- gUGCGGaCGGCGU----UUUGC-AUG-CGCAC- -5'
21216 3' -54.1 NC_004778.3 + 114649 0.66 0.927469
Target:  5'- -uUGCa-GCCGCGAAGCGUuuGCGCa-- -3'
miRNA:   3'- guGCGgaCGGCGUUUUGCA--UGCGcac -5'
21216 3' -54.1 NC_004778.3 + 98721 0.66 0.927469
Target:  5'- gGCaGCCgGCCGCGGccgcAGCGUGCuuCGUGu -3'
miRNA:   3'- gUG-CGGaCGGCGUU----UUGCAUGc-GCAC- -5'
21216 3' -54.1 NC_004778.3 + 53681 0.66 0.927469
Target:  5'- aCAUGCUUGCCGCc-AGCGccgaggaGCGCGa- -3'
miRNA:   3'- -GUGCGGACGGCGuuUUGCa------UGCGCac -5'
21216 3' -54.1 NC_004778.3 + 90251 0.66 0.927469
Target:  5'- aGCGCCUGCaugacCGUAGcgGGCG-ACGCGgUGg -3'
miRNA:   3'- gUGCGGACG-----GCGUU--UUGCaUGCGC-AC- -5'
21216 3' -54.1 NC_004778.3 + 86646 0.66 0.927469
Target:  5'- -cCGCC-GCCGaCAAcGCGUGCGCc-- -3'
miRNA:   3'- guGCGGaCGGC-GUUuUGCAUGCGcac -5'
21216 3' -54.1 NC_004778.3 + 55140 0.66 0.927469
Target:  5'- aGCGCgaGCCGCAGAcCGgcCuCGUGc -3'
miRNA:   3'- gUGCGgaCGGCGUUUuGCauGcGCAC- -5'
21216 3' -54.1 NC_004778.3 + 69610 0.66 0.92135
Target:  5'- gACGaCCUGCC-CAgucauaaagcuaaGAGCGUGCGCa-- -3'
miRNA:   3'- gUGC-GGACGGcGU-------------UUUGCAUGCGcac -5'
21216 3' -54.1 NC_004778.3 + 88692 0.67 0.916117
Target:  5'- gAUGUC-GCCGCGcagcAAGCG-GCGCGUGc -3'
miRNA:   3'- gUGCGGaCGGCGU----UUUGCaUGCGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.