miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21234 3' -49.7 NC_004778.3 + 21343 0.66 0.99612
Target:  5'- -aCGGCuGCACGUCcgccGGcgAGCACUu -3'
miRNA:   3'- cgGCUG-CGUGCAGauu-UCuaUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 125005 0.66 0.99612
Target:  5'- -aUGACGCAUGUCUGA----GGCAUUc -3'
miRNA:   3'- cgGCUGCGUGCAGAUUucuaUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 115145 0.66 0.995444
Target:  5'- cGCCaGCGCGgGUCaUAAuguGGUGGUGCUc -3'
miRNA:   3'- -CGGcUGCGUgCAG-AUUu--CUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 69775 0.66 0.995444
Target:  5'- aUCGAUGUAgCGcUCUGGAGGcgUGGCGCa -3'
miRNA:   3'- cGGCUGCGU-GC-AGAUUUCU--AUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 46692 0.66 0.995444
Target:  5'- uGCaCGACGCACGUUUGgacaacaaaAAGAUcAGgACc -3'
miRNA:   3'- -CG-GCUGCGUGCAGAU---------UUCUA-UCgUGa -5'
21234 3' -49.7 NC_004778.3 + 9701 0.66 0.995372
Target:  5'- gGCCGGCGCGgCGUCguguuccaaaacGGCGCg -3'
miRNA:   3'- -CGGCUGCGU-GCAGauuucua-----UCGUGa -5'
21234 3' -49.7 NC_004778.3 + 60447 0.66 0.993805
Target:  5'- cGUCGACGC-CGUUUAAAGAcuuccgccGGCuGCUg -3'
miRNA:   3'- -CGGCUGCGuGCAGAUUUCUa-------UCG-UGA- -5'
21234 3' -49.7 NC_004778.3 + 20105 0.66 0.993712
Target:  5'- cGCUGACGCACGUCacuuguuuuuccAGUACg -3'
miRNA:   3'- -CGGCUGCGUGCAGauuucua-----UCGUGa -5'
21234 3' -49.7 NC_004778.3 + 80834 0.67 0.992823
Target:  5'- aGCCGGC-CAUGUacgcgugccUUAAAGAgUGGCACa -3'
miRNA:   3'- -CGGCUGcGUGCA---------GAUUUCU-AUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 4431 0.67 0.992823
Target:  5'- gGCCGACGCAauuauuCG-CUucGAAGA-GGCGCg -3'
miRNA:   3'- -CGGCUGCGU------GCaGA--UUUCUaUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 33537 0.67 0.991722
Target:  5'- gGuuGG-GCGCGUCcAAAGAcGGCGCg -3'
miRNA:   3'- -CggCUgCGUGCAGaUUUCUaUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 14024 0.67 0.99049
Target:  5'- uGUCGAaGCGCa-CUGAAGGUAGUGCUu -3'
miRNA:   3'- -CGGCUgCGUGcaGAUUUCUAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 22565 0.67 0.99049
Target:  5'- uGCCGACGCGCccgUAccGcUGGCGCUa -3'
miRNA:   3'- -CGGCUGCGUGcagAUuuCuAUCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 112224 0.67 0.98912
Target:  5'- gGCCG-CGCG-GUCcAGGuGAUAGCACg -3'
miRNA:   3'- -CGGCuGCGUgCAGaUUU-CUAUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 106869 0.67 0.98912
Target:  5'- cGCCGACGCccugGCGUUaaagccgagGAGGAUcagacaaccgAGCGCUu -3'
miRNA:   3'- -CGGCUGCG----UGCAGa--------UUUCUA----------UCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 60336 0.67 0.98912
Target:  5'- -gCGGCGUGcCGUUgcaAAAGGUGGCGCg -3'
miRNA:   3'- cgGCUGCGU-GCAGa--UUUCUAUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 44445 0.67 0.9876
Target:  5'- uGCCGACGCAUGUUcAAAcacuuUAGUugUa -3'
miRNA:   3'- -CGGCUGCGUGCAGaUUUcu---AUCGugA- -5'
21234 3' -49.7 NC_004778.3 + 31616 0.67 0.9876
Target:  5'- aUCGGCggugguauuggGCGCGUCcAAAGAUcGCACUg -3'
miRNA:   3'- cGGCUG-----------CGUGCAGaUUUCUAuCGUGA- -5'
21234 3' -49.7 NC_004778.3 + 33044 0.68 0.985921
Target:  5'- uGCUGGCGCACuuuuuGUUcGAAGAgagccUGGCGCa -3'
miRNA:   3'- -CGGCUGCGUG-----CAGaUUUCU-----AUCGUGa -5'
21234 3' -49.7 NC_004778.3 + 63334 0.68 0.984073
Target:  5'- aGCCG-CGCACGUUUcAAAcGGU-GCACa -3'
miRNA:   3'- -CGGCuGCGUGCAGA-UUU-CUAuCGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.