miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21236 5' -55.6 NC_004778.3 + 113928 0.66 0.899766
Target:  5'- cUCgCGGAGAGCGAgcgcggcGGaUGGCGCaCGAu -3'
miRNA:   3'- aAGaGCUUUUCGCU-------CCaGCCGCG-GCU- -5'
21236 5' -55.6 NC_004778.3 + 52475 0.66 0.893791
Target:  5'- -gCUCGuuuGGCGAaaaGGcagCGGCGCUGGa -3'
miRNA:   3'- aaGAGCuuuUCGCU---CCa--GCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 108551 0.66 0.87983
Target:  5'- ---gCGGcaAAAGCGuGGUCGGCGgCGu -3'
miRNA:   3'- aagaGCU--UUUCGCuCCAGCCGCgGCu -5'
21236 5' -55.6 NC_004778.3 + 99718 0.66 0.872505
Target:  5'- gUUCUCaAAAGGCaGGGUCGaCGCUGGc -3'
miRNA:   3'- -AAGAGcUUUUCGcUCCAGCcGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 73199 0.66 0.864956
Target:  5'- --aUCGAAAAGCaGGGUacggcucgcguUGGCGCCa- -3'
miRNA:   3'- aagAGCUUUUCGcUCCA-----------GCCGCGGcu -5'
21236 5' -55.6 NC_004778.3 + 24403 0.67 0.85719
Target:  5'- ----aGAAAAGCacGGUCGGCGuuGAc -3'
miRNA:   3'- aagagCUUUUCGcuCCAGCCGCggCU- -5'
21236 5' -55.6 NC_004778.3 + 99915 0.67 0.849213
Target:  5'- gUUCUCaAAAAGCaGGGUCGaCGCUGGc -3'
miRNA:   3'- -AAGAGcUUUUCGcUCCAGCcGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 66784 0.67 0.836028
Target:  5'- gUCUguacgCGAAAAaCGAGugcuaucuuacgugcGUCGGCGCCGAc -3'
miRNA:   3'- aAGA-----GCUUUUcGCUC---------------CAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 42498 0.67 0.81534
Target:  5'- --gUUGAGGgcGGCGuGGUCGGCGugcCCGAc -3'
miRNA:   3'- aagAGCUUU--UCGCuCCAGCCGC---GGCU- -5'
21236 5' -55.6 NC_004778.3 + 21657 0.67 0.81534
Target:  5'- gUUUCGGccGGCGGuGG-CGGCGCCa- -3'
miRNA:   3'- aAGAGCUuuUCGCU-CCaGCCGCGGcu -5'
21236 5' -55.6 NC_004778.3 + 125190 0.68 0.804615
Target:  5'- aUCgUCGGugaccuucaCGAGGUCGGCGCCc- -3'
miRNA:   3'- aAG-AGCUuuuc-----GCUCCAGCCGCGGcu -5'
21236 5' -55.6 NC_004778.3 + 99849 0.68 0.797336
Target:  5'- gUUCUCaAAAGGCaGGGUCGaCGCUGAc -3'
miRNA:   3'- -AAGAGcUUUUCGcUCCAGCcGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 60949 0.69 0.759545
Target:  5'- -aCUCuu-GAGCGuGGUCGGCGCa-- -3'
miRNA:   3'- aaGAGcuuUUCGCuCCAGCCGCGgcu -5'
21236 5' -55.6 NC_004778.3 + 19843 0.69 0.713815
Target:  5'- gUCUguaccCGAAAAGCGAgugcuaucuuuaaacGugcGUCGGCGCCGAc -3'
miRNA:   3'- aAGA-----GCUUUUCGCU---------------C---CAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 66718 0.69 0.708735
Target:  5'- gUCUguaccCGAAAAGCGAgugcuaucuuuGGacgugcgUCGGCGCCGAc -3'
miRNA:   3'- aAGA-----GCUUUUCGCU-----------CC-------AGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 66652 0.69 0.708735
Target:  5'- gUCUguaccCGAAAAGCGAgugcuaucuuuGGacgugcgUCGGCGCCGAc -3'
miRNA:   3'- aAGA-----GCUUUUCGCU-----------CC-------AGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 19998 0.69 0.708735
Target:  5'- gUCUguaccCGAAAAGCGAgugcuaucuuuGGacgugcgUCGGCGCCGAc -3'
miRNA:   3'- aAGA-----GCUUUUCGCU-----------CC-------AGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 125218 0.7 0.678979
Target:  5'- -aCUUGAAAAuCGGGGUCaGCGCCa- -3'
miRNA:   3'- aaGAGCUUUUcGCUCCAGcCGCGGcu -5'
21236 5' -55.6 NC_004778.3 + 122616 0.7 0.668629
Target:  5'- --aUCaAAAAGa-AGGUCGGCGCCGAc -3'
miRNA:   3'- aagAGcUUUUCgcUCCAGCCGCGGCU- -5'
21236 5' -55.6 NC_004778.3 + 31403 0.71 0.627011
Target:  5'- uUUCUCGGc--GCGAGGUgCGcGCGCCa- -3'
miRNA:   3'- -AAGAGCUuuuCGCUCCA-GC-CGCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.