miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21269 3' -47.5 NC_004778.3 + 24292 0.66 0.999609
Target:  5'- uGCGUC---AGCGCcgaccUCGCgUUUCGAGu -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGaAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 24094 0.66 0.999609
Target:  5'- uGCGUC---AGCGCcgaccUCGCgUUUCGAGu -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGaAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 11343 0.66 0.99925
Target:  5'- cCACGUCgugAUGGCuguugaugcauucguCguaCGCUUUUUGAGg -3'
miRNA:   3'- -GUGCAGa--UAUCGu--------------Ga--GCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99640 0.66 0.999233
Target:  5'- uGCGUC---AGCGCcgacccUGCUUUUCGAGu -3'
miRNA:   3'- gUGCAGauaUCGUGa-----GCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 80822 0.67 0.998582
Target:  5'- aCGCGUgcCUuaaagaGUGGCACaCGCUgUUCGAGu -3'
miRNA:   3'- -GUGCA--GA------UAUCGUGaGCGAaAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 122942 0.67 0.998038
Target:  5'- aCACGUCcguacacguaaacgUAUGGCACUCGUacccgaaaagCGGGg -3'
miRNA:   3'- -GUGCAG--------------AUAUCGUGAGCGaaaa------GCUC- -5'
21269 3' -47.5 NC_004778.3 + 122741 0.67 0.997926
Target:  5'- -cUGUCUGaGGCAUU-GUUUUUCGAGa -3'
miRNA:   3'- guGCAGAUaUCGUGAgCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 12207 0.67 0.997768
Target:  5'- gCACGUCUGaacuggacaaauGCACUCGCgcaacagaccgUUUCGAu -3'
miRNA:   3'- -GUGCAGAUau----------CGUGAGCGa----------AAAGCUc -5'
21269 3' -47.5 NC_004778.3 + 123132 0.68 0.996476
Target:  5'- uGCGUC---GGCGCcaacccCGCUUUUCGGGu -3'
miRNA:   3'- gUGCAGauaUCGUGa-----GCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 42798 0.68 0.996476
Target:  5'- aGCGUCUu--GCACUCGUgcaccgUCGGc -3'
miRNA:   3'- gUGCAGAuauCGUGAGCGaaa---AGCUc -5'
21269 3' -47.5 NC_004778.3 + 91345 0.68 0.99511
Target:  5'- aCGCGUCUGUGG-AgaCGCUgUUCGAc -3'
miRNA:   3'- -GUGCAGAUAUCgUgaGCGAaAAGCUc -5'
21269 3' -47.5 NC_004778.3 + 99550 0.69 0.993342
Target:  5'- gCAUGUUUAaaaaaCACUCGUUUUUCGGGu -3'
miRNA:   3'- -GUGCAGAUauc--GUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 34462 0.69 0.992283
Target:  5'- gCGCGUCgaggAGCGCacCGCgg-UCGAGa -3'
miRNA:   3'- -GUGCAGaua-UCGUGa-GCGaaaAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 122856 0.7 0.988289
Target:  5'- gCAUGUCUAaGGgAUUUGUUUUUUGAGa -3'
miRNA:   3'- -GUGCAGAUaUCgUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 5738 0.7 0.986651
Target:  5'- gACGg--GUGGCGCUCGUcUUUCGGa -3'
miRNA:   3'- gUGCagaUAUCGUGAGCGaAAAGCUc -5'
21269 3' -47.5 NC_004778.3 + 99321 0.7 0.980672
Target:  5'- aGCGgggUUAaauGUACUCGUUUUUCGAGa -3'
miRNA:   3'- gUGCa--GAUau-CGUGAGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 66555 0.72 0.959293
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGc -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 19967 0.72 0.959293
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGc -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 19747 0.72 0.959293
Target:  5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGc -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5'
21269 3' -47.5 NC_004778.3 + 99516 0.72 0.959293
Target:  5'- uGCGUC---GGCGCcgaccUCGCUUUUCGGGc -3'
miRNA:   3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.