miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21284 5' -56.7 NC_004778.3 + 118733 0.66 0.873906
Target:  5'- uGCGCUuGGCCUCgGCgcggCGGcGCACa- -3'
miRNA:   3'- -CGCGG-CUGGAG-CGaaaaGCC-CGUGca -5'
21284 5' -56.7 NC_004778.3 + 10297 0.66 0.873906
Target:  5'- gGCGCucgCGACUUCGUUgggagCGGGCguuaaggcgaGCGUg -3'
miRNA:   3'- -CGCG---GCUGGAGCGAaaa--GCCCG----------UGCA- -5'
21284 5' -56.7 NC_004778.3 + 45212 0.66 0.866532
Target:  5'- cGCGCUGAUgguagCGCUcgUCGGcGCGCa- -3'
miRNA:   3'- -CGCGGCUGga---GCGAaaAGCC-CGUGca -5'
21284 5' -56.7 NC_004778.3 + 31263 0.66 0.866532
Target:  5'- cGCGCCGAgaaaCUUGCg-UUCGcGCGCGa -3'
miRNA:   3'- -CGCGGCUg---GAGCGaaAAGCcCGUGCa -5'
21284 5' -56.7 NC_004778.3 + 31069 0.66 0.858948
Target:  5'- -aGaCCGACCUUGCUgcggUCGuGCACa- -3'
miRNA:   3'- cgC-GGCUGGAGCGAaa--AGCcCGUGca -5'
21284 5' -56.7 NC_004778.3 + 49607 0.66 0.858948
Target:  5'- -aGCCGugCgagCGCacugCGGGCGCu- -3'
miRNA:   3'- cgCGGCugGa--GCGaaaaGCCCGUGca -5'
21284 5' -56.7 NC_004778.3 + 30318 0.66 0.851159
Target:  5'- cGCGUCGuCUUCGgag--UGGGCGCGUu -3'
miRNA:   3'- -CGCGGCuGGAGCgaaaaGCCCGUGCA- -5'
21284 5' -56.7 NC_004778.3 + 22459 0.66 0.851159
Target:  5'- -gGCCaGACCaugUCGUUgguggCGGGCGCGc -3'
miRNA:   3'- cgCGG-CUGG---AGCGAaaa--GCCCGUGCa -5'
21284 5' -56.7 NC_004778.3 + 19884 0.66 0.843171
Target:  5'- gGCGCCGACCUCGCagugcuaUCuuacGUGCGUc -3'
miRNA:   3'- -CGCGGCUGGAGCGaaa----AGcc--CGUGCA- -5'
21284 5' -56.7 NC_004778.3 + 85916 0.66 0.842361
Target:  5'- aCGCCGACgcuuucguucccgCUCGUga-UCGGGCuCGUc -3'
miRNA:   3'- cGCGGCUG-------------GAGCGaaaAGCCCGuGCA- -5'
21284 5' -56.7 NC_004778.3 + 110062 0.67 0.834991
Target:  5'- uGCGCCaggcgGACCagGUUUc-CGGGCACGc -3'
miRNA:   3'- -CGCGG-----CUGGagCGAAaaGCCCGUGCa -5'
21284 5' -56.7 NC_004778.3 + 70161 0.67 0.829994
Target:  5'- cGCGCCagaauGGCgUCGCUgcccaguugcagguuUUgcggCGGGCGCGc -3'
miRNA:   3'- -CGCGG-----CUGgAGCGA---------------AAa---GCCCGUGCa -5'
21284 5' -56.7 NC_004778.3 + 27455 0.67 0.826626
Target:  5'- cGUGCgCGAgCUUGaauuggUUUCGGGCaACGUg -3'
miRNA:   3'- -CGCG-GCUgGAGCga----AAAGCCCG-UGCA- -5'
21284 5' -56.7 NC_004778.3 + 38610 0.67 0.824082
Target:  5'- aGCGCCGGCCgUCGCaaaaauggcuuccaUUguggcugCGGGCaguaGCGUu -3'
miRNA:   3'- -CGCGGCUGG-AGCG--------------AAaa-----GCCCG----UGCA- -5'
21284 5' -56.7 NC_004778.3 + 121862 0.67 0.809375
Target:  5'- cGCGCCGACaaCGUgcccgacgCGGGCcugcACGUg -3'
miRNA:   3'- -CGCGGCUGgaGCGaaaa----GCCCG----UGCA- -5'
21284 5' -56.7 NC_004778.3 + 13859 0.67 0.809375
Target:  5'- cGUGCCGAuggaagcacuaCCUucagugCGCUUcgacacaaaUUUGGGCACGUu -3'
miRNA:   3'- -CGCGGCU-----------GGA------GCGAA---------AAGCCCGUGCA- -5'
21284 5' -56.7 NC_004778.3 + 89192 0.67 0.809375
Target:  5'- -gGCCGcGCC-CGuCUUUUUGGGCGCc- -3'
miRNA:   3'- cgCGGC-UGGaGC-GAAAAGCCCGUGca -5'
21284 5' -56.7 NC_004778.3 + 64780 0.67 0.79148
Target:  5'- gGCGCCGaugGCCaauaUGCUUgUUCGGGCgACGc -3'
miRNA:   3'- -CGCGGC---UGGa---GCGAA-AAGCCCG-UGCa -5'
21284 5' -56.7 NC_004778.3 + 113910 0.67 0.79057
Target:  5'- gGCGCCGcggguuCCUCGCUcg-CGGagagcgaGCGCGg -3'
miRNA:   3'- -CGCGGCu-----GGAGCGAaaaGCC-------CGUGCa -5'
21284 5' -56.7 NC_004778.3 + 99542 0.68 0.776747
Target:  5'- aCGCUGACgCauguuuaaaaaacacUCGUUUUUCGGGUACa- -3'
miRNA:   3'- cGCGGCUG-G---------------AGCGAAAAGCCCGUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.