miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21299 5' -56.5 NC_004778.3 + 129453 0.66 0.865036
Target:  5'- cGGCGC--GUCCGCggcguACAGCgC-CAGCAUu -3'
miRNA:   3'- -CCGCGuuCAGGCG-----UGUUG-GcGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 129299 0.66 0.849366
Target:  5'- uGGCGCuguacgCCGCGgAcgcGCCGCAGUu- -3'
miRNA:   3'- -CCGCGuuca--GGCGUgU---UGGCGUCGug -5'
21299 5' -56.5 NC_004778.3 + 128754 0.67 0.797743
Target:  5'- aGGCGgAGGUaugcCCGCcgACAaaguuggcGCUGCAGCAUc -3'
miRNA:   3'- -CCGCgUUCA----GGCG--UGU--------UGGCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 128673 0.67 0.797743
Target:  5'- aGGCGgAGGUaugcCCGCcgACAaaguuggcGCUGCAGCAUc -3'
miRNA:   3'- -CCGCgUUCA----GGCG--UGU--------UGGCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 127575 0.66 0.832887
Target:  5'- uGCGCAAaacaauuUCCGCGCAcaACUuCAGCGCc -3'
miRNA:   3'- cCGCGUUc------AGGCGUGU--UGGcGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 125954 0.66 0.857305
Target:  5'- cGCGUucagGAGgaaaaggCgGCGgAGCUGCAGCGCa -3'
miRNA:   3'- cCGCG----UUCa------GgCGUgUUGGCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 125846 0.66 0.832887
Target:  5'- cGGCGUug--CgGUACAACCcUAGCACg -3'
miRNA:   3'- -CCGCGuucaGgCGUGUUGGcGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 125499 0.68 0.740607
Target:  5'- cGCGCA-GcCCGUACuuauACC-CAGCGCg -3'
miRNA:   3'- cCGCGUuCaGGCGUGu---UGGcGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 124632 0.66 0.857305
Target:  5'- gGGCGCGGGccuuaUCGCGCcuauaaauaaGGCCGCaccgaacugguaAGCACa -3'
miRNA:   3'- -CCGCGUUCa----GGCGUG----------UUGGCG------------UCGUG- -5'
21299 5' -56.5 NC_004778.3 + 124568 0.67 0.815657
Target:  5'- cGCGcCGAGUCacguaggcgcgCGCGCAACUuuuuuGCAGUGCa -3'
miRNA:   3'- cCGC-GUUCAG-----------GCGUGUUGG-----CGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 124283 0.68 0.730687
Target:  5'- cGGCGCGcuucaAGaaUGCugAAgCGCGGCGCc -3'
miRNA:   3'- -CCGCGU-----UCagGCGugUUgGCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 121970 0.66 0.832887
Target:  5'- aGCGCGGGcgacaucaaCCGCAUuACgCGCGGCAa -3'
miRNA:   3'- cCGCGUUCa--------GGCGUGuUG-GCGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 121764 0.71 0.58684
Target:  5'- cGGCGU-GGaCCGCGC-GCUGCAGCAg -3'
miRNA:   3'- -CCGCGuUCaGGCGUGuUGGCGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 121601 0.74 0.403833
Target:  5'- aGGCGCGGGuUCUGCuGCAGCgCGCGGUccACg -3'
miRNA:   3'- -CCGCGUUC-AGGCG-UGUUG-GCGUCG--UG- -5'
21299 5' -56.5 NC_004778.3 + 120966 0.75 0.338179
Target:  5'- gGGCGCGGG-CCGCGCccgcuGCCcCGGCGCc -3'
miRNA:   3'- -CCGCGUUCaGGCGUGu----UGGcGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 120692 0.68 0.72068
Target:  5'- aGGCGCucGUCguUGaCGCcuccgAACUGCAGCACa -3'
miRNA:   3'- -CCGCGuuCAG--GC-GUG-----UUGGCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 118786 0.66 0.832887
Target:  5'- cGGCGCGgccGG-CgCGCACAauuacgagGCCcaGCGGCGCc -3'
miRNA:   3'- -CCGCGU---UCaG-GCGUGU--------UGG--CGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 116787 0.67 0.788551
Target:  5'- gGGCGCGuaaaacgcguucAGcgugCCGguCAGCUGCAGUAa -3'
miRNA:   3'- -CCGCGU------------UCa---GGCguGUUGGCGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 114929 0.68 0.730687
Target:  5'- aGCGCAAG-CCggcguGCGC-ACCGCGGCc- -3'
miRNA:   3'- cCGCGUUCaGG-----CGUGuUGGCGUCGug -5'
21299 5' -56.5 NC_004778.3 + 114075 0.66 0.841224
Target:  5'- cGCGCucgcucUCCGCgaGCGAggaacCCGCGGCGCc -3'
miRNA:   3'- cCGCGuuc---AGGCG--UGUU-----GGCGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.