Results 1 - 20 of 172 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21299 | 5' | -56.5 | NC_004778.3 | + | 38453 | 0.66 | 0.865036 |
Target: 5'- cGGCGCGcGGUCgCGUGCG--CGCuGGCGCa -3' miRNA: 3'- -CCGCGU-UCAG-GCGUGUugGCG-UCGUG- -5' |
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21299 | 5' | -56.5 | NC_004778.3 | + | 21294 | 0.66 | 0.832887 |
Target: 5'- cGGCGCuc--CCGaCGCcGCagaGCGGCACg -3' miRNA: 3'- -CCGCGuucaGGC-GUGuUGg--CGUCGUG- -5' |
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21299 | 5' | -56.5 | NC_004778.3 | + | 127575 | 0.66 | 0.832887 |
Target: 5'- uGCGCAAaacaauuUCCGCGCAcaACUuCAGCGCc -3' miRNA: 3'- cCGCGUUc------AGGCGUGU--UGGcGUCGUG- -5' |
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21299 | 5' | -56.5 | NC_004778.3 | + | 108610 | 0.81 | 0.166543 |
Target: 5'- aGCGCAGcuGUCCGUACAAcaaauacagcCCGCGGCGCa -3' miRNA: 3'- cCGCGUU--CAGGCGUGUU----------GGCGUCGUG- -5' |
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21299 | 5' | -56.5 | NC_004778.3 | + | 94849 | 0.66 | 0.864272 |
Target: 5'- cGCGCAcgcucgcGGUUCaGCGCGAa-GCAGUACg -3' miRNA: 3'- cCGCGU-------UCAGG-CGUGUUggCGUCGUG- -5' |
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21299 | 5' | -56.5 | NC_004778.3 | + | 75928 | 0.66 | 0.864272 |
Target: 5'- aGGC-CGuGUuuGCGCAcaugcuuGCCGCcAGCGCc -3' miRNA: 3'- -CCGcGUuCAggCGUGU-------UGGCG-UCGUG- -5' |
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21299 | 5' | -56.5 | NC_004778.3 | + | 33231 | 0.66 | 0.849366 |
Target: 5'- cGGCaGCGGG-CCGCuGC-ACCGUuGCGCc -3' miRNA: 3'- -CCG-CGUUCaGGCG-UGuUGGCGuCGUG- -5' |
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21299 | 5' | -56.5 | NC_004778.3 | + | 81451 | 0.66 | 0.849366 |
Target: 5'- aGGgGCAA-UCCGCGCcGCCGU-GCGu -3' miRNA: 3'- -CCgCGUUcAGGCGUGuUGGCGuCGUg -5' |
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21299 | 5' | -56.5 | NC_004778.3 | + | 77856 | 0.66 | 0.849366 |
Target: 5'- aGGuCGUAGaUCCGCACGugCGUcccGUACa -3' miRNA: 3'- -CC-GCGUUcAGGCGUGUugGCGu--CGUG- -5' |
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21299 | 5' | -56.5 | NC_004778.3 | + | 106615 | 0.66 | 0.841224 |
Target: 5'- uGCGCGuuuugCgCGCGCAGCgCGCucAGCGCg -3' miRNA: 3'- cCGCGUuca--G-GCGUGUUG-GCG--UCGUG- -5' |
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21299 | 5' | -56.5 | NC_004778.3 | + | 114075 | 0.66 | 0.841224 |
Target: 5'- cGCGCucgcucUCCGCgaGCGAggaacCCGCGGCGCc -3' miRNA: 3'- cCGCGuuc---AGGCG--UGUU-----GGCGUCGUG- -5' |
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21299 | 5' | -56.5 | NC_004778.3 | + | 101075 | 0.66 | 0.849366 |
Target: 5'- gGGCGU--GUCCGCAUggaacgAGCCGUacaagGGCAa -3' miRNA: 3'- -CCGCGuuCAGGCGUG------UUGGCG-----UCGUg -5' |
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21299 | 5' | -56.5 | NC_004778.3 | + | 129453 | 0.66 | 0.865036 |
Target: 5'- cGGCGC--GUCCGCggcguACAGCgC-CAGCAUu -3' miRNA: 3'- -CCGCGuuCAGGCG-----UGUUG-GcGUCGUG- -5' |
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21299 | 5' | -56.5 | NC_004778.3 | + | 2548 | 0.66 | 0.841224 |
Target: 5'- gGGCGCGGGcacgucggccaCCGCGCGGaaGUuucGGCACa -3' miRNA: 3'- -CCGCGUUCa----------GGCGUGUUggCG---UCGUG- -5' |
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21299 | 5' | -56.5 | NC_004778.3 | + | 51430 | 0.66 | 0.865036 |
Target: 5'- gGGCGCAuGUCCaGCAaagaCGCAGgAUu -3' miRNA: 3'- -CCGCGUuCAGG-CGUguugGCGUCgUG- -5' |
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21299 | 5' | -56.5 | NC_004778.3 | + | 90945 | 0.66 | 0.849366 |
Target: 5'- uGGCGUAAGUCuUGCcuaaACcguGACCGcCGGCAa -3' miRNA: 3'- -CCGCGUUCAG-GCG----UG---UUGGC-GUCGUg -5' |
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21299 | 5' | -56.5 | NC_004778.3 | + | 34313 | 0.66 | 0.841224 |
Target: 5'- uGCGCAGcuugucgCCGCcgGCGACCGCGucgucguacGCGCg -3' miRNA: 3'- cCGCGUUca-----GGCG--UGUUGGCGU---------CGUG- -5' |
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21299 | 5' | -56.5 | NC_004778.3 | + | 125846 | 0.66 | 0.832887 |
Target: 5'- cGGCGUug--CgGUACAACCcUAGCACg -3' miRNA: 3'- -CCGCGuucaGgCGUGUUGGcGUCGUG- -5' |
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21299 | 5' | -56.5 | NC_004778.3 | + | 40539 | 0.66 | 0.864272 |
Target: 5'- cGGCGCucGUuucccagCCaGCACGACaauuGCAGCAa -3' miRNA: 3'- -CCGCGuuCA-------GG-CGUGUUGg---CGUCGUg -5' |
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21299 | 5' | -56.5 | NC_004778.3 | + | 124632 | 0.66 | 0.857305 |
Target: 5'- gGGCGCGGGccuuaUCGCGCcuauaaauaaGGCCGCaccgaacugguaAGCACa -3' miRNA: 3'- -CCGCGUUCa----GGCGUG----------UUGGCG------------UCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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