miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21340 5' -58.4 NC_004778.3 + 36674 0.66 0.79662
Target:  5'- -cGCAGUCGUUuaGGcCGgCCGUGggcaacaCCGCg -3'
miRNA:   3'- gaCGUUAGCAG--UC-GCgGGCACg------GGCG- -5'
21340 5' -58.4 NC_004778.3 + 21083 0.66 0.79662
Target:  5'- -cGaCAggCGUCAGCGCggugcaGCCCGCg -3'
miRNA:   3'- gaC-GUuaGCAGUCGCGggca--CGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 124040 0.66 0.78759
Target:  5'- gCUGCAGuuucuuguacuUCGUgcaAGUGCUCGUGCagaUGCa -3'
miRNA:   3'- -GACGUU-----------AGCAg--UCGCGGGCACGg--GCG- -5'
21340 5' -58.4 NC_004778.3 + 14718 0.66 0.78759
Target:  5'- uUGCAuUCGa-GGUGCCCGguucguaCCCGCu -3'
miRNA:   3'- gACGUuAGCagUCGCGGGCac-----GGGCG- -5'
21340 5' -58.4 NC_004778.3 + 106054 0.66 0.778423
Target:  5'- -aGaCAAgUGUCGGCGCCgCGUguuuuaauaacaGCCCGUc -3'
miRNA:   3'- gaC-GUUaGCAGUCGCGG-GCA------------CGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 43123 0.66 0.778423
Target:  5'- -cGCAAgcgcuUCGaCGGCGCCgCGgcGCgCCGCa -3'
miRNA:   3'- gaCGUU-----AGCaGUCGCGG-GCa-CG-GGCG- -5'
21340 5' -58.4 NC_004778.3 + 93890 0.66 0.77286
Target:  5'- -aGCAAaacgUGuuUCGGCGCUCGUauauaacgcacauccGCCCGCu -3'
miRNA:   3'- gaCGUUa---GC--AGUCGCGGGCA---------------CGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 94785 0.66 0.769126
Target:  5'- gUGCAGUUGcCuGCgGCCCGgGCUCGg -3'
miRNA:   3'- gACGUUAGCaGuCG-CGGGCaCGGGCg -5'
21340 5' -58.4 NC_004778.3 + 39394 0.66 0.769126
Target:  5'- -cGUAGUUGUgGG-GCCCGgUGCUgGCg -3'
miRNA:   3'- gaCGUUAGCAgUCgCGGGC-ACGGgCG- -5'
21340 5' -58.4 NC_004778.3 + 14500 0.66 0.769126
Target:  5'- gUGCGAUUG-CGGCGacgagaCCGUGaCgCGCg -3'
miRNA:   3'- gACGUUAGCaGUCGCg-----GGCAC-GgGCG- -5'
21340 5' -58.4 NC_004778.3 + 83400 0.66 0.769126
Target:  5'- uCUGCAAcaaCG-CAGCcaaucGCCCGUGCagcuggccgCCGCu -3'
miRNA:   3'- -GACGUUa--GCaGUCG-----CGGGCACG---------GGCG- -5'
21340 5' -58.4 NC_004778.3 + 47674 0.66 0.769126
Target:  5'- -cGCAGUCGgugUUGGCGCCgGgaaaaaUGCCCaGCc -3'
miRNA:   3'- gaCGUUAGC---AGUCGCGGgC------ACGGG-CG- -5'
21340 5' -58.4 NC_004778.3 + 25753 0.66 0.769126
Target:  5'- -aGCAG-CGUCAGUGUCgGcagGCCgGCc -3'
miRNA:   3'- gaCGUUaGCAGUCGCGGgCa--CGGgCG- -5'
21340 5' -58.4 NC_004778.3 + 38116 0.66 0.765373
Target:  5'- -cGCAcgcCGUCcGCGUCCGcagugaagcgcagGCCCGCu -3'
miRNA:   3'- gaCGUua-GCAGuCGCGGGCa------------CGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 112225 0.66 0.759708
Target:  5'- -aGCAcaccAUCaUgGGCGUagacgaCGUGCCCGCg -3'
miRNA:   3'- gaCGU----UAGcAgUCGCGg-----GCACGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 38505 0.66 0.759708
Target:  5'- -cGCGAcgCGuUCGGCGUCCaUGCCUuGCa -3'
miRNA:   3'- gaCGUUa-GC-AGUCGCGGGcACGGG-CG- -5'
21340 5' -58.4 NC_004778.3 + 66737 0.66 0.750179
Target:  5'- -aGCAcUCGcuuuUCgAGaCGCUCGUGCCCGa -3'
miRNA:   3'- gaCGUuAGC----AG-UC-GCGGGCACGGGCg -5'
21340 5' -58.4 NC_004778.3 + 121312 0.66 0.750179
Target:  5'- gCUGCAGaUGgcuugCAGCuGCgCCGUGUCgGCg -3'
miRNA:   3'- -GACGUUaGCa----GUCG-CG-GGCACGGgCG- -5'
21340 5' -58.4 NC_004778.3 + 20937 0.66 0.750179
Target:  5'- -cGCAGcccaGcCGGcCGCCCGauUGCCCGUa -3'
miRNA:   3'- gaCGUUag--CaGUC-GCGGGC--ACGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 98743 0.66 0.750179
Target:  5'- gUGCuucguGUUGUagCAGCGCgCGUGCaagCCGCc -3'
miRNA:   3'- gACGu----UAGCA--GUCGCGgGCACG---GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.