miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 3' -45 NC_004778.3 + 51093 0.66 0.999993
Target:  5'- gUCAGg---UAGAGCgaauuaaaGUCCAGCGaaaaCGCa -3'
miRNA:   3'- -GGUUaaaaAUCUCGa-------CAGGUUGC----GCG- -5'
21341 3' -45 NC_004778.3 + 25866 0.66 0.999993
Target:  5'- gCGAUaaUUAGGGUgUGUgCCGGCGCGa -3'
miRNA:   3'- gGUUAaaAAUCUCG-ACA-GGUUGCGCg -5'
21341 3' -45 NC_004778.3 + 59340 0.66 0.999993
Target:  5'- aCAGUUgcaagacauugUGGAGCUGUCCGugauuuuccuuaGCaaGCa -3'
miRNA:   3'- gGUUAAaa---------AUCUCGACAGGU------------UGcgCG- -5'
21341 3' -45 NC_004778.3 + 65018 0.66 0.99999
Target:  5'- -----aUUUGGGGCaUGUgcgCCAGCGaCGCu -3'
miRNA:   3'- gguuaaAAAUCUCG-ACA---GGUUGC-GCG- -5'
21341 3' -45 NC_004778.3 + 90144 0.66 0.99999
Target:  5'- gCGGUaUUcUGGAGC-GUgCAGCGCGUu -3'
miRNA:   3'- gGUUAaAA-AUCUCGaCAgGUUGCGCG- -5'
21341 3' -45 NC_004778.3 + 105633 0.66 0.999986
Target:  5'- aCCAAUUccc-GcGCUuccGUCCGAgGCGCg -3'
miRNA:   3'- -GGUUAAaaauCuCGA---CAGGUUgCGCG- -5'
21341 3' -45 NC_004778.3 + 38312 0.66 0.999986
Target:  5'- gCGGguagcgUGGAGgUGUCgAGCgGCGCa -3'
miRNA:   3'- gGUUaaaa--AUCUCgACAGgUUG-CGCG- -5'
21341 3' -45 NC_004778.3 + 2624 0.66 0.999981
Target:  5'- gCCAGUUUggUGGAGCgGaUCAGCGUa- -3'
miRNA:   3'- -GGUUAAAa-AUCUCGaCaGGUUGCGcg -5'
21341 3' -45 NC_004778.3 + 124429 0.67 0.999963
Target:  5'- aUCAGgc--UGGuGCUGUUCAACuGUGCu -3'
miRNA:   3'- -GGUUaaaaAUCuCGACAGGUUG-CGCG- -5'
21341 3' -45 NC_004778.3 + 93604 0.67 0.999952
Target:  5'- aCCAAacacccauGCUGUgCGugGCGCg -3'
miRNA:   3'- -GGUUaaaaaucuCGACAgGUugCGCG- -5'
21341 3' -45 NC_004778.3 + 31435 0.67 0.99995
Target:  5'- uCCAAg--UcGGAGCaGUC--GCGCGCg -3'
miRNA:   3'- -GGUUaaaAaUCUCGaCAGguUGCGCG- -5'
21341 3' -45 NC_004778.3 + 111864 0.67 0.99995
Target:  5'- gCAGUUUUcGGAgGCg--CCGACGCuGCa -3'
miRNA:   3'- gGUUAAAAaUCU-CGacaGGUUGCG-CG- -5'
21341 3' -45 NC_004778.3 + 76445 0.67 0.99995
Target:  5'- gCCAAaugc--GAGCcGUUCAcgGCGCGCg -3'
miRNA:   3'- -GGUUaaaaauCUCGaCAGGU--UGCGCG- -5'
21341 3' -45 NC_004778.3 + 80977 0.67 0.99995
Target:  5'- gCAGUUUUUA-AGCgucauagcGUCCAACgaGCGCu -3'
miRNA:   3'- gGUUAAAAAUcUCGa-------CAGGUUG--CGCG- -5'
21341 3' -45 NC_004778.3 + 61623 0.67 0.999933
Target:  5'- gCAAgcgUUUGGcGCcGcgcagCCAGCGCGCg -3'
miRNA:   3'- gGUUaa-AAAUCuCGaCa----GGUUGCGCG- -5'
21341 3' -45 NC_004778.3 + 43976 0.67 0.999933
Target:  5'- -gGAUUacUUUGGcGCgccGcCCAACGCGCg -3'
miRNA:   3'- ggUUAA--AAAUCuCGa--CaGGUUGCGCG- -5'
21341 3' -45 NC_004778.3 + 3405 0.68 0.999911
Target:  5'- cCCAuUUUUgaaaaAGAGCguauggUGUCCGugaucacgGCGCGCc -3'
miRNA:   3'- -GGUuAAAAa----UCUCG------ACAGGU--------UGCGCG- -5'
21341 3' -45 NC_004778.3 + 125735 0.68 0.999911
Target:  5'- gCCGcgcgUUGGuacGGCUGUCCAuUGUGCc -3'
miRNA:   3'- -GGUuaaaAAUC---UCGACAGGUuGCGCG- -5'
21341 3' -45 NC_004778.3 + 27566 0.68 0.999911
Target:  5'- gCCAAcg--UGGAccGCUG-CCuGCGCGCc -3'
miRNA:   3'- -GGUUaaaaAUCU--CGACaGGuUGCGCG- -5'
21341 3' -45 NC_004778.3 + 49377 0.68 0.999911
Target:  5'- gUCGAgguagUUGGGGCcGgCCAGCGcCGCg -3'
miRNA:   3'- -GGUUaaa--AAUCUCGaCaGGUUGC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.