miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 59739 0.66 0.998106
Target:  5'- gGCGCGCGUAuuGAAaauguuucuugcCGgGCAACUGg--- -3'
miRNA:   3'- -CGCGCGCGU--UUU------------GCgCGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 93384 0.66 0.998106
Target:  5'- uCGCG-GC-GAugGCGCcGCUGaUGGa -3'
miRNA:   3'- cGCGCgCGuUUugCGCGuUGAUaACC- -5'
21341 5' -49.2 NC_004778.3 + 96850 0.66 0.998106
Target:  5'- cGCGCGCGCAucuuaucauGACaGCcgGCGAUUAUaaaaGGa -3'
miRNA:   3'- -CGCGCGCGUu--------UUG-CG--CGUUGAUAa---CC- -5'
21341 5' -49.2 NC_004778.3 + 8116 0.66 0.998106
Target:  5'- aGCGaCGUGC---ACGUGCuACcAUUGGa -3'
miRNA:   3'- -CGC-GCGCGuuuUGCGCGuUGaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 33445 0.66 0.998106
Target:  5'- gGCG-GCGCGAAAaGCGCGGCc----- -3'
miRNA:   3'- -CGCgCGCGUUUUgCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 17345 0.66 0.99773
Target:  5'- -gGUGCGCGGGGCGC-UAGCUGa--- -3'
miRNA:   3'- cgCGCGCGUUUUGCGcGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 26138 0.66 0.99773
Target:  5'- -aGCGUGCG--ACGUGCAGCa----- -3'
miRNA:   3'- cgCGCGCGUuuUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 46563 0.66 0.99773
Target:  5'- uGUGCGaCGCGGcACGCGcCAAagagUGGc -3'
miRNA:   3'- -CGCGC-GCGUUuUGCGC-GUUgauaACC- -5'
21341 5' -49.2 NC_004778.3 + 93008 0.66 0.99773
Target:  5'- gGC-CGCGU-GAACGCGCAGCa----- -3'
miRNA:   3'- -CGcGCGCGuUUUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 22761 0.66 0.99773
Target:  5'- uUGCGCaCAAuauUGCGCcccauggugaGGCUAUUGGg -3'
miRNA:   3'- cGCGCGcGUUuu-GCGCG----------UUGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 27936 0.66 0.99773
Target:  5'- aGCGUGCGC---ACGCGUAucacaaaauggcGCUcgUGc -3'
miRNA:   3'- -CGCGCGCGuuuUGCGCGU------------UGAuaACc -5'
21341 5' -49.2 NC_004778.3 + 38315 0.66 0.997689
Target:  5'- gGCGCGgGUAgcguggaggugucGAGCgGCGCAGCg---GGc -3'
miRNA:   3'- -CGCGCgCGU-------------UUUG-CGCGUUGauaaCC- -5'
21341 5' -49.2 NC_004778.3 + 31862 0.66 0.997689
Target:  5'- cCGCGCaGCAAAACcgcaucgucgaguGCGaCAGCgaaAUUGGc -3'
miRNA:   3'- cGCGCG-CGUUUUG-------------CGC-GUUGa--UAACC- -5'
21341 5' -49.2 NC_004778.3 + 118934 0.66 0.997648
Target:  5'- uGUGCGCGCcGGcCGCGCcGCgcccgaagcgUGGc -3'
miRNA:   3'- -CGCGCGCGuUUuGCGCGuUGaua-------ACC- -5'
21341 5' -49.2 NC_004778.3 + 9570 0.66 0.997606
Target:  5'- uGCGCGCcacgccaaacugcuGCAGuuuGCGCGCGuggugaaAUUGGu -3'
miRNA:   3'- -CGCGCG--------------CGUUu--UGCGCGUuga----UAACC- -5'
21341 5' -49.2 NC_004778.3 + 16170 0.66 0.997293
Target:  5'- uGCGCGuCGCGGAuaacaACGCcaaGCAAgUucuuUUGGg -3'
miRNA:   3'- -CGCGC-GCGUUU-----UGCG---CGUUgAu---AACC- -5'
21341 5' -49.2 NC_004778.3 + 88662 0.66 0.997293
Target:  5'- uGCGCG-GUugacGGugGCGCAAUUGgacgGGa -3'
miRNA:   3'- -CGCGCgCGu---UUugCGCGUUGAUaa--CC- -5'
21341 5' -49.2 NC_004778.3 + 68661 0.66 0.997293
Target:  5'- -aGUGCGUuccAACGCGCGugUGUc-- -3'
miRNA:   3'- cgCGCGCGuu-UUGCGCGUugAUAacc -5'
21341 5' -49.2 NC_004778.3 + 88010 0.66 0.997293
Target:  5'- uGUGCGCGCucAGACuGCaCAGCguacgcGUUGGu -3'
miRNA:   3'- -CGCGCGCGu-UUUG-CGcGUUGa-----UAACC- -5'
21341 5' -49.2 NC_004778.3 + 16951 0.66 0.997293
Target:  5'- cGCGCGCGCuguuCGauaugGCGACca-UGGg -3'
miRNA:   3'- -CGCGCGCGuuuuGCg----CGUUGauaACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.